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Items: 1 to 20 of 59

1.

Bacterial genomics: Microbial GWAS coming of age.

Falush D.

Nat Microbiol. 2016 Apr 26;1:16059. doi: 10.1038/nmicrobiol.2016.59. No abstract available.

PMID:
27572652
2.

The Kalash Genetic Isolate? The Evidence for Recent Admixture.

Hellenthal G, Falush D, Myers S, Reich D, Busby GB, Lipson M, Capelli C, Patterson N.

Am J Hum Genet. 2016 Feb 4;98(2):396-7. doi: 10.1016/j.ajhg.2015.12.025. No abstract available.

PMID:
26849116
3.

The Landscape of Realized Homologous Recombination in Pathogenic Bacteria.

Yahara K, Didelot X, Jolley KA, Kobayashi I, Maiden MC, Sheppard SK, Falush D.

Mol Biol Evol. 2016 Feb;33(2):456-71. doi: 10.1093/molbev/msv237. Epub 2015 Oct 29.

PMID:
26516092
4.

Roary: rapid large-scale prokaryote pan genome analysis.

Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J.

Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20.

PMID:
26198102
5.

The fine-scale genetic structure of the British population.

Leslie S, Winney B, Hellenthal G, Davison D, Boumertit A, Day T, Hutnik K, Royrvik EC, Cunliffe B; Wellcome Trust Case Control Consortium 2; International Multiple Sclerosis Genetics Consortium, Lawson DJ, Falush D, Freeman C, Pirinen M, Myers S, Robinson M, Donnelly P, Bodmer W.

Nature. 2015 Mar 19;519(7543):309-14. doi: 10.1038/nature14230.

PMID:
25788095
6.

Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus.

Cui Y, Yang X, Didelot X, Guo C, Li D, Yan Y, Zhang Y, Yuan Y, Yang H, Wang J, Wang J, Song Y, Zhou D, Falush D, Yang R.

Mol Biol Evol. 2015 Jun;32(6):1396-410. doi: 10.1093/molbev/msv009. Epub 2015 Jan 19.

PMID:
25605790
7.

Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis.

Cao Q, Didelot X, Wu Z, Li Z, He L, Li Y, Ni M, You Y, Lin X, Li Z, Gong Y, Zheng M, Zhang M, Liu J, Wang W, Bo X, Falush D, Wang S, Zhang J.

Gut. 2015 Apr;64(4):554-61. doi: 10.1136/gutjnl-2014-307345. Epub 2014 Jul 9.

PMID:
25007814
8.

A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data.

O'Brien JD, Didelot X, Iqbal Z, Amenga-Etego L, Ahiska B, Falush D.

Genetics. 2014 Jul;197(3):925-37. doi: 10.1534/genetics.114.161299. Epub 2014 May 1.

PMID:
24793089
9.

Efficient inference of recombination hot regions in bacterial genomes.

Yahara K, Didelot X, Ansari MA, Sheppard SK, Falush D.

Mol Biol Evol. 2014 Jun;31(6):1593-605. doi: 10.1093/molbev/msu082. Epub 2014 Feb 27.

PMID:
24586045
10.

A genetic atlas of human admixture history.

Hellenthal G, Busby GB, Band G, Wilson JF, Capelli C, Falush D, Myers S.

Science. 2014 Feb 14;343(6172):747-51. doi: 10.1126/science.1243518.

PMID:
24531965
11.

Recent acquisition of Helicobacter pylori by Baka pygmies.

Nell S, Eibach D, Montano V, Maady A, Nkwescheu A, Siri J, Elamin WF, Falush D, Linz B, Achtman M, Moodley Y, Suerbaum S.

PLoS Genet. 2013;9(9):e1003775. doi: 10.1371/journal.pgen.1003775. Epub 2013 Sep 19.

PMID:
24068950
12.

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter.

Sheppard SK, Didelot X, Meric G, Torralbo A, Jolley KA, Kelly DJ, Bentley SD, Maiden MC, Parkhill J, Falush D.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11923-7. doi: 10.1073/pnas.1305559110. Epub 2013 Jul 1.

PMID:
23818615
13.

Progressive genome-wide introgression in agricultural Campylobacter coli.

Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC, Falush D.

Mol Ecol. 2013 Feb;22(4):1051-64. doi: 10.1111/mec.12162. Epub 2012 Dec 20.

PMID:
23279096
14.

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.

Cui Y, Yu C, Yan Y, Li D, Li Y, Jombart T, Weinert LA, Wang Z, Guo Z, Xu L, Zhang Y, Zheng H, Qin N, Xiao X, Wu M, Wang X, Zhou D, Qi Z, Du Z, Wu H, Yang X, Cao H, Wang H, Wang J, Yao S, Rakin A, Li Y, Falush D, Balloux F, Achtman M, Song Y, Wang J, Yang R.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):577-82. doi: 10.1073/pnas.1205750110. Epub 2012 Dec 27.

PMID:
23271803
15.

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli.

Méric G, Kemsley EK, Falush D, Saggers EJ, Lucchini S.

Environ Microbiol. 2013 Feb;15(2):487-501. doi: 10.1111/j.1462-2920.2012.02852.x. Epub 2012 Aug 30.

PMID:
22934605
16.

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli.

Didelot X, Méric G, Falush D, Darling AE.

BMC Genomics. 2012 Jun 19;13:256. doi: 10.1186/1471-2164-13-256.

PMID:
22712577
17.

Population identification using genetic data.

Lawson DJ, Falush D.

Annu Rev Genomics Hum Genet. 2012;13:337-61. doi: 10.1146/annurev-genom-082410-101510. Epub 2012 Jun 11. Review.

PMID:
22703172
18.

Inference of population structure using dense haplotype data.

Lawson DJ, Hellenthal G, Myers S, Falush D.

PLoS Genet. 2012 Jan;8(1):e1002453. doi: 10.1371/journal.pgen.1002453. Epub 2012 Jan 26.

PMID:
22291602
19.

Recombination and population structure in Salmonella enterica.

Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D, Donnelly P.

PLoS Genet. 2011 Jul;7(7):e1002191. doi: 10.1371/journal.pgen.1002191. Epub 2011 Jul 28.

PMID:
21829375
20.

Helicobacter pylori genome evolution during human infection.

Kennemann L, Didelot X, Aebischer T, Kuhn S, Drescher B, Droege M, Reinhardt R, Correa P, Meyer TF, Josenhans C, Falush D, Suerbaum S.

Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5033-8. doi: 10.1073/pnas.1018444108. Epub 2011 Mar 7.

PMID:
21383187
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