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Results: 1 to 20 of 21

1.

Mining the Human Gut Microbiota for Effector Strains that Shape the Immune System.

Ahern PP, Faith JJ, Gordon JI.

Immunity. 2014 Jun 19;40(6):815-823. doi: 10.1016/j.immuni.2014.05.012. Review.

PMID:
24950201
[PubMed - as supplied by publisher]
2.

Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice.

Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI.

Sci Transl Med. 2014 Jan 22;6(220):220ra11. doi: 10.1126/scitranslmed.3008051.

PMID:
24452263
[PubMed - in process]
Free PMC Article
3.

Gut microbiota from twins discordant for obesity modulate metabolism in mice.

Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI.

Science. 2013 Sep 6;341(6150):1241214. doi: 10.1126/science.1241214.

PMID:
24009397
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The long-term stability of the human gut microbiota.

Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI.

Science. 2013 Jul 5;341(6141):1237439. doi: 10.1126/science.1237439.

PMID:
23828941
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG.

Nat Methods. 2013 Jan;10(1):57-9. doi: 10.1038/nmeth.2276. Epub 2012 Dec 2.

PMID:
23202435
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts.

Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R.

Genome Res. 2012 Oct;22(10):1974-84. doi: 10.1101/gr.138198.112. Epub 2012 Jun 4.

PMID:
22665442
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins.

McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, Bain JR, Muehlbauer MJ, Newgard CB, Heath AC, Gordon JI.

Sci Transl Med. 2011 Oct 26;3(106):106ra106. doi: 10.1126/scitranslmed.3002701.

PMID:
22030749
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Predicting a human gut microbiota's response to diet in gnotobiotic mice.

Faith JJ, McNulty NP, Rey FE, Gordon JI.

Science. 2011 Jul 1;333(6038):101-4. doi: 10.1126/science.1206025. Epub 2011 May 19.

PMID:
21596954
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice.

Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI.

Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6252-7. doi: 10.1073/pnas.1102938108. Epub 2011 Mar 21.

PMID:
21436049
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Creating and characterizing communities of human gut microbes in gnotobiotic mice.

Faith JJ, Rey FE, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, Gordon JI.

ISME J. 2010 Sep;4(9):1094-8. doi: 10.1038/ismej.2010.110. Epub 2010 Jul 22. Review. No abstract available.

PMID:
20664551
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dissecting the in vivo metabolic potential of two human gut acetogens.

Rey FE, Faith JJ, Bain J, Muehlbauer MJ, Stevens RD, Newgard CB, Gordon JI.

J Biol Chem. 2010 Jul 16;285(29):22082-90. doi: 10.1074/jbc.M110.117713. Epub 2010 May 5.

PMID:
20444704
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Reverse-engineering transcription control networks.

Gardner TS, Faith JJ.

Phys Life Rev. 2005 Mar;2(1):65-88. doi: 10.1016/j.plrev.2005.01.001.

PMID:
20416858
[PubMed]
13.

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice.

Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI.

Sci Transl Med. 2009 Nov 11;1(6):6ra14. doi: 10.1126/scitranslmed.3000322.

PMID:
20368178
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins.

Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7503-8. doi: 10.1073/pnas.1002355107. Epub 2010 Apr 2.

PMID:
20363958
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis.

Giannakis M, Bäckhed HK, Chen SL, Faith JJ, Wu M, Guruge JL, Engstrand L, Gordon JI.

J Biol Chem. 2009 Oct 30;284(44):30383-94. doi: 10.1074/jbc.M109.052738. Epub 2009 Sep 1.

PMID:
19723631
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata.

Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, Gardner TS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D866-70. Epub 2007 Oct 11.

PMID:
17932051
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R.

BMC Bioinformatics. 2007 Sep 18;8:344.

PMID:
17877794
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles.

Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS.

PLoS Biol. 2007 Jan;5(1):e8.

PMID:
17214507
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

EGenBio: a data management system for evolutionary genomics and biodiversity.

Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, Pollock DD.

BMC Bioinformatics. 2006 Sep 6;7 Suppl 2:S7.

PMID:
17118150
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Evolution of base-substitution gradients in primate mitochondrial genomes.

Raina SZ, Faith JJ, Disotell TR, Seligmann H, Stewart CB, Pollock DD.

Genome Res. 2005 May;15(5):665-73.

PMID:
15867428
[PubMed - indexed for MEDLINE]
Free PMC Article

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