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Results: 1 to 20 of 46

1.

Molecular dynamics comparison of E. coli WrbA apoprotein and holoprotein.

Reha D, Harish B, Sinha D, Kukacka Z, McSally J, Ettrichova O, Novak P, Carey J, Ettrich R.

J Mol Model. 2014 Sep;20(9):2400. doi: 10.1007/s00894-014-2400-8. Epub 2014 Aug 26.

PMID:
25152065
[PubMed - in process]
2.

Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I.

Sinha D, Shamayeva K, Ramasubramani V, Řeha D, Bialevich V, Khabiri M, Guzanová A, Milbar N, Weiserová M, Csefalvay E, Carey J, Ettrich R.

J Mol Model. 2014 Jul;20(7):2334. doi: 10.1007/s00894-014-2334-1. Epub 2014 Jun 28.

PMID:
24972799
[PubMed - in process]
3.

Binding-competent states for L-arginine in E. coli arginine repressor apoprotein.

Pandey SK, Řeha D, Zayats V, Melichercik M, Carey J, Ettrich R.

J Mol Model. 2014 Jul;20(7):2330. doi: 10.1007/s00894-014-2330-5. Epub 2014 Jun 21.

PMID:
24952066
[PubMed - in process]
4.

Inhibition of GlcNAc-processing glycosidases by C-6-azido-NAG-thiazoline and its derivatives.

Krejzová J, Simon P, Kalachova L, Kulik N, Bojarová P, Marhol P, Pelantová H, Cvačka J, Ettrich R, Slámová K, Křen V.

Molecules. 2014 Mar 20;19(3):3471-88. doi: 10.3390/molecules19033471.

PMID:
24658571
[PubMed - in process]
Free Article
5.

Expression, characterization and homology modeling of a novel eukaryotic GH84 β-N-acetylglucosaminidase from Penicillium chrysogenum.

Slámová K, Kulik N, Fiala M, Krejzová-Hofmeisterová J, Ettrich R, Křen V.

Protein Expr Purif. 2014 Mar;95:204-10. doi: 10.1016/j.pep.2014.01.002. Epub 2014 Jan 14.

PMID:
24434566
[PubMed - in process]
6.

1.2 Å resolution crystal structure of Escherichia coli WrbA holoprotein.

Kishko I, Carey J, Reha D, Brynda J, Winkler R, Harish B, Guerra R, Ettrichova O, Kukacka Z, Sheryemyetyeva O, Novak P, Kuty M, Kuta Smatanova I, Ettrich R, Lapkouski M.

Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1748-57. doi: 10.1107/S0907444913017162. Epub 2013 Aug 15.

PMID:
23999298
[PubMed - indexed for MEDLINE]
7.

Expansion of access tunnels and active-site cavities influence activity of haloalkane dehalogenases in organic cosolvents.

Stepankova V, Khabiri M, Brezovsky J, Pavelka A, Sykora J, Amaro M, Minofar B, Prokop Z, Hof M, Ettrich R, Chaloupkova R, Damborsky J.

Chembiochem. 2013 May 10;14(7):890-7. doi: 10.1002/cbic.201200733. Epub 2013 Apr 5.

PMID:
23564727
[PubMed - indexed for MEDLINE]
8.

Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel.

Koudelakova T, Chaloupkova R, Brezovsky J, Prokop Z, Sebestova E, Hesseler M, Khabiri M, Plevaka M, Kulik D, Kuta Smatanova I, Rezacova P, Ettrich R, Bornscheuer UT, Damborsky J.

Angew Chem Int Ed Engl. 2013 Feb 11;52(7):1959-63. doi: 10.1002/anie.201206708. Epub 2013 Jan 9. No abstract available.

PMID:
23303607
[PubMed - indexed for MEDLINE]
9.

Structural model of lymphocyte receptor NKR-P1C revealed by mass spectrometry and molecular modeling.

Rozbesky D, Sovova Z, Marcoux J, Man P, Ettrich R, Robinson CV, Novak P.

Anal Chem. 2013 Feb 5;85(3):1597-604. doi: 10.1021/ac302860m. Epub 2013 Jan 14.

PMID:
23249299
[PubMed - indexed for MEDLINE]
10.

Raman spectroscopy adds complementary detail to the high-resolution x-ray crystal structure of photosynthetic PsbP from Spinacia oleracea.

Kopecky V Jr, Kohoutova J, Lapkouski M, Hofbauerova K, Sovova Z, Ettrichova O, González-Pérez S, Dulebo A, Kaftan D, Smatanova IK, Revuelta JL, Arellano JB, Carey J, Ettrich R.

PLoS One. 2012;7(10):e46694. doi: 10.1371/journal.pone.0046694. Epub 2012 Oct 5.

PMID:
23071614
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Biphasic kinetic behavior of E. coli WrbA, an FMN-dependent NAD(P)H:quinone oxidoreductase.

Kishko I, Harish B, Zayats V, Reha D, Tenner B, Beri D, Gustavsson T, Ettrich R, Carey J.

PLoS One. 2012;7(8):e43902. doi: 10.1371/journal.pone.0043902. Epub 2012 Aug 29.

PMID:
22952804
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Interaction of organic solvents with protein structures at protein-solvent interface.

Khabiri M, Minofar B, Brezovský J, Damborský J, Ettrich R.

J Mol Model. 2013 Nov;19(11):4701-11. doi: 10.1007/s00894-012-1507-z. Epub 2012 Jul 4.

PMID:
22760789
[PubMed - indexed for MEDLINE]
13.

Regulation of the transient receptor potential channel TRPA1 by its N-terminal ankyrin repeat domain.

Zayats V, Samad A, Minofar B, Roelofs KE, Stockner T, Ettrich R.

J Mol Model. 2013 Nov;19(11):4689-700. doi: 10.1007/s00894-012-1505-1. Epub 2012 Jul 3.

PMID:
22752543
[PubMed - indexed for MEDLINE]
14.

A computational study of the oligosaccharide binding sites in the lectin-like domain of Tumor Necrosis Factor and the TNF-derived TIP peptide.

Dulebo A, Ettrich R, Lucas R, Kaftan D.

Curr Pharm Des. 2012;18(27):4236-43.

PMID:
22697478
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Charybdotoxin and margatoxin acting on the human voltage-gated potassium channel hKv1.3 and its H399N mutant: an experimental and computational comparison.

Nikouee A, Khabiri M, Grissmer S, Ettrich R.

J Phys Chem B. 2012 May 3;116(17):5132-40. doi: 10.1021/jp2102463. Epub 2012 Apr 19.

PMID:
22490327
[PubMed - indexed for MEDLINE]
16.

Charybdotoxin unbinding from the mKv1.3 potassium channel: a combined computational and experimental study.

Khabiri M, Nikouee A, Cwiklik L, Grissmer S, Ettrich R.

J Phys Chem B. 2011 Oct 6;115(39):11490-500. doi: 10.1021/jp2061909. Epub 2011 Sep 13.

PMID:
21877740
[PubMed - indexed for MEDLINE]
17.

Enzymatic characterization and molecular modeling of an evolutionarily interesting fungal β-N-acetylhexosaminidase.

Ryšlavá H, Kalendová A, Doubnerová V, Skočdopol P, Kumar V, Kukačka Z, Pompach P, Vaněk O, Slámová K, Bojarová P, Kulik N, Ettrich R, Křen V, Bezouška K.

FEBS J. 2011 Jul;278(14):2469-84. doi: 10.1111/j.1742-4658.2011.08173.x. Epub 2011 Jun 1.

PMID:
21564548
[PubMed - indexed for MEDLINE]
18.

Synergy of molecular dynamics and isothermal titration calorimetry in studies of allostery.

Strawn R, Stockner T, Melichercik M, Jin L, Xue WF, Carey J, Ettrich R.

Methods Enzymol. 2011;492:151-88. doi: 10.1016/B978-0-12-381268-1.00017-3.

PMID:
21333791
[PubMed - indexed for MEDLINE]
19.

Inhibition of human serine racemase, an emerging target for medicinal chemistry.

Jirásková-Vaníčková J, Ettrich R, Vorlová B, Hoffman HE, Lepšík M, Jansa P, Konvalinka J.

Curr Drug Targets. 2011 Jun;12(7):1037-55. Review.

PMID:
21291385
[PubMed - indexed for MEDLINE]
20.

Backbone assignment and secondary structure of the PsbQ protein from photosystem II.

Horničáková M, Kohoutová J, Schlagnitweit J, Wohlschlager C, Ettrich R, Fiala R, Schoefberger W, Müller N.

Biomol NMR Assign. 2011 Oct;5(2):169-75. doi: 10.1007/s12104-011-9293-6. Epub 2011 Jan 23.

PMID:
21259076
[PubMed - indexed for MEDLINE]

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