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Results: 1 to 20 of 31

1.

Population health: immaturity in the gut microbial community.

Costello EK, Relman DA.

Nature. 2014 Jun 19;510(7505):344-5. doi: 10.1038/nature13347. Epub 2014 Jun 4. No abstract available.

PMID:
24896185
[PubMed - indexed for MEDLINE]
2.

Microbiome assembly across multiple body sites in low-birthweight infants.

Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA.

MBio. 2013 Oct 29;4(6):e00782-13. doi: 10.1128/mBio.00782-13.

PMID:
24169577
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.

Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17059-64. doi: 10.1073/pnas.1306070110. Epub 2013 Sep 23.

PMID:
24062455
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Cohabiting family members share microbiota with one another and with their dogs.

Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R.

Elife. 2013 Apr 16;2:e00458. doi: 10.7554/eLife.00458.

PMID:
23599893
[PubMed - in process]
Free PMC Article
5.

Biphasic assembly of the murine intestinal microbiota during early development.

Pantoja-Feliciano IG, Clemente JC, Costello EK, Perez ME, Blaser MJ, Knight R, Dominguez-Bello MG.

ISME J. 2013 Jun;7(6):1112-5. doi: 10.1038/ismej.2013.15. Epub 2013 Mar 28.

PMID:
23535917
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.

Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U.

PLoS One. 2013;8(1):e53838. doi: 10.1371/journal.pone.0053838. Epub 2013 Jan 22.

PMID:
23349750
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.

Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF.

Genome Res. 2013 Jan;23(1):111-20. doi: 10.1101/gr.142315.112. Epub 2012 Aug 30.

PMID:
22936250
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents.

Blaser MJ, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Estrada I, Gao Z, Clemente JC, Costello EK, Knight R.

ISME J. 2013 Jan;7(1):85-95. doi: 10.1038/ismej.2012.81. Epub 2012 Aug 16.

PMID:
22895161
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The application of ecological theory toward an understanding of the human microbiome.

Costello EK, Stagaman K, Dethlefsen L, Bohannan BJ, Relman DA.

Science. 2012 Jun 8;336(6086):1255-62. doi: 10.1126/science.1224203. Epub 2012 Jun 6. Review.

PMID:
22674335
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sources of bacteria in outdoor air across cities in the midwestern United States.

Bowers RM, Sullivan AP, Costello EK, Collett JL Jr, Knight R, Fierer N.

Appl Environ Microbiol. 2011 Sep;77(18):6350-6. doi: 10.1128/AEM.05498-11. Epub 2011 Jul 29.

PMID:
21803902
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Moving pictures of the human microbiome.

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R.

Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50.

PMID:
21624126
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

PMID:
21552244
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Global patterns in the biogeography of bacterial taxa.

Nemergut DR, Costello EK, Hamady M, Lozupone C, Jiang L, Schmidt SK, Fierer N, Townsend AR, Cleveland CC, Stanish L, Knight R.

Environ Microbiol. 2011 Jan;13(1):135-44. doi: 10.1111/j.1462-2920.2010.02315.x.

PMID:
21199253
[PubMed - indexed for MEDLINE]
14.

Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.

Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V, Relman DA, Banfield JF.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1128-33. doi: 10.1073/pnas.1010992108. Epub 2010 Dec 29. Erratum in: Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4512.

PMID:
21191099
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Supervised classification of human microbiota.

Knights D, Costello EK, Knight R.

FEMS Microbiol Rev. 2011 Mar;35(2):343-59. doi: 10.1111/j.1574-6976.2010.00251.x. Epub 2010 Oct 7. Review.

PMID:
21039646
[PubMed - indexed for MEDLINE]
16.

The bacterial microbiota in the oral mucosa of rural Amerindians.

Contreras M, Costello EK, Hidalgo G, Magris M, Knight R, Dominguez-Bello MG.

Microbiology. 2010 Nov;156(Pt 11):3282-7. doi: 10.1099/mic.0.043174-0. Epub 2010 Sep 16.

PMID:
20847007
[PubMed - indexed for MEDLINE]
Free Article
17.

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.

Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11971-5. doi: 10.1073/pnas.1002601107. Epub 2010 Jun 21.

PMID:
20566857
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Postprandial remodeling of the gut microbiota in Burmese pythons.

Costello EK, Gordon JI, Secor SM, Knight R.

ISME J. 2010 Nov;4(11):1375-85. doi: 10.1038/ismej.2010.71. Epub 2010 Jun 3.

PMID:
20520652
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Direct sequencing of the human microbiome readily reveals community differences.

Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R.

Genome Biol. 2010;11(5):210. doi: 10.1186/gb-2010-11-5-210. Epub 2010 May 5. Review.

PMID:
20441597
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

PMID:
20383131
[PubMed - indexed for MEDLINE]
Free PMC Article

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