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Results: 1 to 20 of 228

1.

Improved Single Copy Assays for Quantification of Persistent HIV-1 Viremia in Patients on Suppressive Antiretroviral Therapy.

Cillo AR, Vagratian D, Bedison M, Anderson E, Kearney MF, Fyne E, Koontz D, Coffin JM, Piatak M, Mellors JW.

J Clin Microbiol. 2014 Sep 3. pii: JCM.02060-14. [Epub ahead of print]

PMID:
25187636
[PubMed - as supplied by publisher]
2.

The distribution of insertionally polymorphic endogenous retroviruses in breast cancer patients and cancer-free controls.

Wildschutte JH, Ram D, Subramanian R, Stevens VL, Coffin JM.

Retrovirology. 2014 Aug 12;11:62. doi: 10.1186/PREACCEPT-1720768941312026.

PMID:
25112280
[PubMed - in process]
Free PMC Article
3.

HIV-1 Infection Leads to Increased Transcription of Human Endogenous Retrovirus HERV-K (HML-2) Proviruses In Vivo but Not to Increased Virion Production.

Bhardwaj N, Maldarelli F, Mellors J, Coffin JM.

J Virol. 2014 Oct 1;88(19):11108-20. doi: 10.1128/JVI.01623-14. Epub 2014 Jul 23.

PMID:
25056891
[PubMed - in process]
4.

HIV latency. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells.

Maldarelli F, Wu X, Su L, Simonetti FR, Shao W, Hill S, Spindler J, Ferris AL, Mellors JW, Kearney MF, Coffin JM, Hughes SH.

Science. 2014 Jul 11;345(6193):179-83. doi: 10.1126/science.1254194. Epub 2014 Jun 26.

PMID:
24968937
[PubMed - indexed for MEDLINE]
5.

Quantification of HIV-1 latency reversal in resting CD4+ T cells from patients on suppressive antiretroviral therapy.

Cillo AR, Sobolewski MD, Bosch RJ, Fyne E, Piatak M Jr, Coffin JM, Mellors JW.

Proc Natl Acad Sci U S A. 2014 May 13;111(19):7078-83. doi: 10.1073/pnas.1402873111. Epub 2014 Mar 31.

PMID:
24706775
[PubMed - indexed for MEDLINE]
6.

PAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data.

Shao W, Kearney MF, Boltz VF, Spindler JE, Mellors JW, Maldarelli F, Coffin JM.

J Virol Methods. 2014 Jul;203:73-80. doi: 10.1016/j.jviromet.2014.03.008. Epub 2014 Mar 26.

PMID:
24681054
[PubMed - in process]
7.

Lack of detectable HIV-1 molecular evolution during suppressive antiretroviral therapy.

Kearney MF, Spindler J, Shao W, Yu S, Anderson EM, O'Shea A, Rehm C, Poethke C, Kovacs N, Mellors JW, Coffin JM, Maldarelli F.

PLoS Pathog. 2014 Mar 20;10(3):e1004010. doi: 10.1371/journal.ppat.1004010. eCollection 2014 Mar.

PMID:
24651464
[PubMed - in process]
Free PMC Article
8.

Endogenous retroviruses and human cancer: is there anything to the rumors?

Bhardwaj N, Coffin JM.

Cell Host Microbe. 2014 Mar 12;15(3):255-9. doi: 10.1016/j.chom.2014.02.013.

PMID:
24629332
[PubMed - in process]
9.

HIV-1 Expression Within Resting CD4+ T Cells After Multiple Doses of Vorinostat.

Archin NM, Bateson R, Tripathy MK, Crooks AM, Yang KH, Dahl NP, Kearney MF, Anderson EM, Coffin JM, Strain MC, Richman DD, Robertson KR, Kashuba AD, Bosch RJ, Hazuda DJ, Kuruc JD, Eron JJ, Margolis DM.

J Infect Dis. 2014 Sep 1;210(5):728-35. doi: 10.1093/infdis/jiu155. Epub 2014 Mar 11.

PMID:
24620025
[PubMed - in process]
10.

Fifteen years later: hard and soft selection sweeps confirm a large population number for HIV in vivo.

Rouzine IM, Coffin JM, Weinberger LS.

PLoS Genet. 2014 Feb 20;10(2):e1004179. doi: 10.1371/journal.pgen.1004179. eCollection 2014 Feb. No abstract available.

PMID:
24586204
[PubMed - in process]
Free PMC Article
11.

False-positive HIV PCR test following ex vivo lentiviral gene transfer treatment of X-linked severe combined immunodeficiency vector.

De Ravin SS, Gray JT, Throm RE, Spindler J, Kearney M, Wu X, Coffin JM, Hughes SH, Malderelli F, Sorrentino BP, Malech HL.

Mol Ther. 2014 Feb;22(2):244-5. doi: 10.1038/mt.2013.296. No abstract available.

PMID:
24487563
[PubMed - in process]
12.

Low-frequency nevirapine (NVP)-resistant HIV-1 variants are not associated with failure of antiretroviral therapy in women without prior exposure to single-dose NVP.

Boltz VF, Bao Y, Lockman S, Halvas EK, Kearney MF, McIntyre JA, Schooley RT, Hughes MD, Coffin JM, Mellors JW; OCTANE/A5208 Team.

J Infect Dis. 2014 Mar 1;209(5):703-10. doi: 10.1093/infdis/jit635. Epub 2014 Jan 16.

PMID:
24443547
[PubMed - indexed for MEDLINE]
13.

A novel recombinant retrovirus in the genomes of modern birds combines features of avian and mammalian retroviruses.

Henzy JE, Gifford RJ, Johnson WE, Coffin JM.

J Virol. 2014 Mar;88(5):2398-405. doi: 10.1128/JVI.02863-13. Epub 2013 Dec 18.

PMID:
24352464
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Generation of multiple replication-competent retroviruses through recombination between PreXMRV-1 and PreXMRV-2.

Delviks-Frankenberry K, Paprotka T, Cingöz O, Wildt S, Hu WS, Coffin JM, Pathak VK.

J Virol. 2013 Nov;87(21):11525-37. doi: 10.1128/JVI.01787-13. Epub 2013 Aug 21.

PMID:
23966380
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule.

Josefsson L, Palmer S, Faria NR, Lemey P, Casazza J, Ambrozak D, Kearney M, Shao W, Kottilil S, Sneller M, Mellors J, Coffin JM, Maldarelli F.

PLoS Pathog. 2013;9(6):e1003432. doi: 10.1371/journal.ppat.1003432. Epub 2013 Jun 20.

PMID:
23818847
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Virions at the gates: receptors and the host-virus arms race.

Coffin JM.

PLoS Biol. 2013;11(5):e1001574. doi: 10.1371/journal.pbio.1001574. Epub 2013 May 28.

PMID:
23723739
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

HIV populations are large and accumulate high genetic diversity in a nonlinear fashion.

Maldarelli F, Kearney M, Palmer S, Stephens R, Mican J, Polis MA, Davey RT, Kovacs J, Shao W, Rock-Kress D, Metcalf JA, Rehm C, Greer SE, Lucey DL, Danley K, Alter H, Mellors JW, Coffin JM.

J Virol. 2013 Sep;87(18):10313-23. doi: 10.1128/JVI.01225-12. Epub 2013 May 15.

PMID:
23678164
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.

Shao W, Boltz VF, Spindler JE, Kearney MF, Maldarelli F, Mellors JW, Stewart C, Volfovsky N, Levitsky A, Stephens RM, Coffin JM.

Retrovirology. 2013 Feb 13;10:18. doi: 10.1186/1742-4690-10-18.

PMID:
23402264
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Betaretroviral envelope subunits are noncovalently associated and restricted to the mammalian class.

Henzy JE, Coffin JM.

J Virol. 2013 Feb;87(4):1937-46. doi: 10.1128/JVI.01442-12. Epub 2012 Dec 5.

PMID:
23221553
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Ultrasensitive allele-specific PCR reveals rare preexisting drug-resistant variants and a large replicating virus population in macaques infected with a simian immunodeficiency virus containing human immunodeficiency virus reverse transcriptase.

Boltz VF, Ambrose Z, Kearney MF, Shao W, Kewalramani VN, Maldarelli F, Mellors JW, Coffin JM.

J Virol. 2012 Dec;86(23):12525-30. doi: 10.1128/JVI.01963-12. Epub 2012 Aug 29.

PMID:
22933296
[PubMed - indexed for MEDLINE]
Free PMC Article

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