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Results: 1 to 20 of 71

1.

Competition for hydrogen-bond formation in the helix-coil transition and protein folding.

Badasyan AV, Tonoyan ShA, Mamasakhlisov YSh, Giacometti A, Benight AS, Morozov VF.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 May;83(5 Pt 1):051903. Epub 2011 May 2.

PMID:
21728568
[PubMed - indexed for MEDLINE]
2.

Statistical analysis of plasma thermograms measured by differential scanning calorimetry.

Fish DJ, Brewood GP, Kim JS, Garbett NC, Chaires JB, Benight AS.

Biophys Chem. 2010 Nov;152(1-3):184-90. doi: 10.1016/j.bpc.2010.09.007. Epub 2010 Sep 29.

PMID:
20961680
[PubMed - indexed for MEDLINE]
3.

The paradox of multiplex DNA melting on a surface.

Williams L, Blair S, Chagovetz A, Fish DJ, Benight AS.

Anal Biochem. 2011 Feb 1;409(1):150-2. doi: 10.1016/j.ab.2010.09.024. Epub 2010 Oct 30.

PMID:
20869345
[PubMed - indexed for MEDLINE]
4.

Microscopic formulation of the Zimm-Bragg model for the helix-coil transition.

Badasyan AV, Giacometti A, Mamasakhlisov YSh, Morozov VF, Benight AS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Feb;81(2 Pt 1):021921. Epub 2010 Feb 23.

PMID:
20365609
[PubMed - indexed for MEDLINE]
5.

Intersegment interactions and helix-coil transition within the generalized model of polypeptide chains approach.

Badasyan AV, Hayrapetyan GN, Tonoyan ShA, Mamasakhlisov YSh, Benight AS, Morozov VF.

J Chem Phys. 2009 Sep 21;131(11):115104. doi: 10.1063/1.3216564.

PMID:
19778153
[PubMed - indexed for MEDLINE]
6.

Influence of buffer species on the thermodynamics of short DNA duplex melting: sodium phosphate versus sodium cacodylate.

Alemayehu S, Fish DJ, Brewood GP, Horne MT, Manyanga F, Dickman R, Yates I, Benight AS.

J Phys Chem B. 2009 Mar 5;113(9):2578-86.

PMID:
19708201
[PubMed - indexed for MEDLINE]
7.

Conformational equilibria of bulged sites in duplex DNA studied by EPR spectroscopy.

Smith AL, Cekan P, Brewood GP, Okonogi TM, Alemayehu S, Hustedt EJ, Benight AS, Sigurdsson ST, Robinson BH.

J Phys Chem B. 2009 Mar 5;113(9):2664-75. doi: 10.1021/jp808260b.

PMID:
19708106
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Origins of the "nucleation" free energy in the hybridization thermodynamics of short duplex DNA.

Manyanga F, Horne MT, Brewood GP, Fish DJ, Dickman R, Benight AS.

J Phys Chem B. 2009 Mar 5;113(9):2556-63.

PMID:
19708103
[PubMed - indexed for MEDLINE]
9.

Tribute for J. Michael Schurr.

Benight AS, Chaires JB.

J Phys Chem B. 2009 Mar 5;113(9):2543-55. doi: 10.1021/jp810594a. No abstract available.

PMID:
19243199
[PubMed]
10.

Tribute for j. Michael schurr.

Benight AS, Chaires JB.

J Phys Chem B. 2009 Mar 5;113(9):2543-4. No abstract available.

PMID:
19243198
[PubMed - as supplied by publisher]
11.

Cellulose/DNA hybrid nanomaterials.

Mangalam AP, Simonsen J, Benight AS.

Biomacromolecules. 2009 Mar 9;10(3):497-504. doi: 10.1021/bm800925x.

PMID:
19186938
[PubMed - indexed for MEDLINE]
12.

Electrical detection of the temperature induced melting transition of a DNA hairpin covalently attached to gold interdigitated microelectrodes.

Brewood GP, Rangineni Y, Fish DJ, Bhandiwad AS, Evans DR, Solanki R, Benight AS.

Nucleic Acids Res. 2008 Sep;36(15):e98. doi: 10.1093/nar/gkn436. Epub 2008 Jul 15.

PMID:
18628294
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Two scale generalized model of polypeptide chains.

Badasyan AV, Tonoyan ShA, Tsarukyan AV, Mamasakhlisov YSh, Benight AS, Morozov VF.

J Chem Phys. 2008 May 21;128(19):195101. doi: 10.1063/1.2918732.

PMID:
18500899
[PubMed - indexed for MEDLINE]
14.

DNA multiplex hybridization on microarrays and thermodynamic stability in solution: a direct comparison.

Fish DJ, Horne MT, Brewood GP, Goodarzi JP, Alemayehu S, Bhandiwad A, Searles RP, Benight AS.

Nucleic Acids Res. 2007;35(21):7197-208. Epub 2007 Oct 18.

PMID:
17947320
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Stacking heterogeneity: a model for the sequence dependent melting cooperativity of duplex DNA.

Grigoryan AV, Mamasakhlisov ESh, Buryakina TY, Tsarukyan AV, Benight AS, Morozov VF.

J Chem Phys. 2007 Apr 28;126(16):165101.

PMID:
17477633
[PubMed - indexed for MEDLINE]
16.

Multiplex SNP discrimination.

Fish DJ, Horne MT, Searles RP, Brewood GP, Benight AS.

Biophys J. 2007 May 15;92(10):L89-91. Epub 2007 Mar 16.

PMID:
17369420
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions.

Horne MT, Fish DJ, Benight AS.

Biophys J. 2006 Dec 1;91(11):4133-53. Epub 2006 Sep 8.

PMID:
16963510
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.

Mandell KE, Vallone PM, Owczarzy R, Riccelli PV, Benight AS.

Biopolymers. 2006 Jun 15;82(3):199-221.

PMID:
16345003
[PubMed - indexed for MEDLINE]
19.

The helix-coil transition in heterogeneous double stranded DNA: microcanonical method.

Badasyan AV, Grigoryan AV, Mamasakhlisov ESh, Benight AS, Morozov VF.

J Chem Phys. 2005 Nov 15;123(19):194701.

PMID:
16321104
[PubMed - indexed for MEDLINE]
20.

Enthalpy/entropy compensation: influence of DNA flanking sequence on the binding of 7-amino actinomycin D to its primary binding site in short DNA duplexes.

Qu X, Ren J, Riccelli PV, Benight AS, Chaires JB.

Biochemistry. 2003 Oct 21;42(41):11960-7.

PMID:
14556627
[PubMed - indexed for MEDLINE]

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