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Items: 9

1.

The DegraBase: a database of proteolysis in healthy and apoptotic human cells.

Crawford ED, Seaman JE, Agard N, Hsu GW, Julien O, Mahrus S, Nguyen H, Shimbo K, Yoshihara HA, Zhuang M, Chalkley RJ, Wells JA.

Mol Cell Proteomics. 2013 Mar;12(3):813-24. doi: 10.1074/mcp.O112.024372. Epub 2012 Dec 20.

2.

Proteolytic post-translational modification of proteins: proteomic tools and methodology.

Rogers LD, Overall CM.

Mol Cell Proteomics. 2013 Dec;12(12):3532-42. doi: 10.1074/mcp.M113.031310. Epub 2013 Jul 25. Review.

3.

The CASBAH: a searchable database of caspase substrates.

Lüthi AU, Martin SJ.

Cell Death Differ. 2007 Apr;14(4):641-50. Epub 2007 Feb 2. Review.

4.

Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses.

Gevaert K, Impens F, Van Damme P, Ghesquière B, Hanoulle X, Vandekerckhove J.

FEBS J. 2007 Dec;274(24):6277-89. Epub 2007 Nov 16. Review.

5.

Protein Termini and Their Modifications Revealed by Positional Proteomics.

Marino G, Eckhard U, Overall CM.

ACS Chem Biol. 2015 Aug 21;10(8):1754-64. doi: 10.1021/acschembio.5b00189. Epub 2015 Jul 6. Review.

6.

Proteomics beyond trypsin.

Tsiatsiani L, Heck AJ.

FEBS J. 2015 Jul;282(14):2612-26. doi: 10.1111/febs.13287. Epub 2015 Apr 14. Review.

7.

Quantitative, high-resolution proteomics for data-driven systems biology.

Cox J, Mann M.

Annu Rev Biochem. 2011;80:273-99. doi: 10.1146/annurev-biochem-061308-093216. Review.

PMID:
21548781
8.

N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification.

Huesgen PF, Overall CM.

Physiol Plant. 2012 May;145(1):5-17. doi: 10.1111/j.1399-3054.2011.01536.x. Epub 2011 Dec 7. Review.

PMID:
22023699
9.

Reaching for the deep proteome: recent nano liquid chromatography coupled with tandem mass spectrometry-based studies on the deep proteome.

Choi YS.

Arch Pharm Res. 2012 Nov;35(11):1861-70. doi: 10.1007/s12272-012-1102-y. Epub 2012 Dec 4. Review.

PMID:
23212627
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