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Results: 12

1.

Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks.

Brochado AR, Andrejev S, Maranas CD, Patil KR.

PLoS Comput Biol. 2012;8(11):e1002758. doi: 10.1371/journal.pcbi.1002758. Epub 2012 Nov 1.

PMID:
23133362
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comparing methods for metabolic network analysis and an application to metabolic engineering.

Tomar N, De RK.

Gene. 2013 May 25;521(1):1-14. doi: 10.1016/j.gene.2013.03.017. Epub 2013 Mar 26. Review.

PMID:
23537990
[PubMed - indexed for MEDLINE]
3.

Methods for the inference of biological pathways and networks.

Bumgarner RE, Yeung KY.

Methods Mol Biol. 2009;541:225-45. doi: 10.1007/978-1-59745-243-4_11. Review.

PMID:
19381545
[PubMed - indexed for MEDLINE]
4.

Metabolic flux distributions: genetic information, computational predictions, and experimental validation.

Blank LM, Kuepfer L.

Appl Microbiol Biotechnol. 2010 May;86(5):1243-55. doi: 10.1007/s00253-010-2506-6. Epub 2010 Mar 16. Review.

PMID:
20232063
[PubMed - indexed for MEDLINE]
5.

Detecting structural invariants in biological reaction networks.

Behre J, de Figueiredo LF, Schuster S, Kaleta C.

Methods Mol Biol. 2012;804:377-407. doi: 10.1007/978-1-61779-361-5_20. Review.

PMID:
22144164
[PubMed - indexed for MEDLINE]
6.

The executable pathway to biological networks.

Fisher J, Piterman N.

Brief Funct Genomics. 2010 Jan;9(1):79-92. doi: 10.1093/bfgp/elp054. Review.

PMID:
20118126
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Modeling information flow in biological networks.

Kim YA, Przytycki JH, Wuchty S, Przytycka TM.

Phys Biol. 2011 Jun;8(3):035012. doi: 10.1088/1478-3975/8/3/035012. Epub 2011 May 13. Review.

PMID:
21572171
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods.

Lewis NE, Nagarajan H, Palsson BO.

Nat Rev Microbiol. 2012 Feb 27;10(4):291-305. doi: 10.1038/nrmicro2737. Review.

PMID:
22367118
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Modular analysis of biological networks.

Kaltenbach HM, Stelling J.

Adv Exp Med Biol. 2012;736:3-17. doi: 10.1007/978-1-4419-7210-1_1. Review.

PMID:
22161320
[PubMed - indexed for MEDLINE]
10.

Biochemical and statistical network models for systems biology.

Price ND, Shmulevich I.

Curr Opin Biotechnol. 2007 Aug;18(4):365-70. Epub 2007 Aug 3. Review.

PMID:
17681779
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Shrinking the metabolic solution space using experimental datasets.

Reed JL.

PLoS Comput Biol. 2012;8(8):e1002662. doi: 10.1371/journal.pcbi.1002662. Epub 2012 Aug 30. Review.

PMID:
22956899
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Dynamical systems approach to endothelial heterogeneity.

Regan ER, Aird WC.

Circ Res. 2012 Jun 22;111(1):110-30. doi: 10.1161/CIRCRESAHA.111.261701. Review.

PMID:
22723222
[PubMed - indexed for MEDLINE]
Free PMC Article

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