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Results: 19

1.

A transition-state interaction shifts nucleobase ionization toward neutrality to facilitate small ribozyme catalysis.

Liberman JA, Guo M, Jenkins JL, Krucinska J, Chen Y, Carey PR, Wedekind JE.

J Am Chem Soc. 2012 Oct 17;134(41):16933-6. doi: 10.1021/ja3070528. Epub 2012 Oct 3.

PMID:
22989273
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Mechanistic considerations for general acid-base catalysis by RNA: revisiting the mechanism of the hairpin ribozyme.

Bevilacqua PC.

Biochemistry. 2003 Mar 4;42(8):2259-65. Review.

PMID:
12600192
[PubMed - indexed for MEDLINE]
3.

Nucleobase catalysis in ribozyme mechanism.

Bevilacqua PC, Yajima R.

Curr Opin Chem Biol. 2006 Oct;10(5):455-64. Epub 2006 Aug 28. Review.

PMID:
16935552
[PubMed - indexed for MEDLINE]
4.

Catalytic strategies of self-cleaving ribozymes.

Cochrane JC, Strobel SA.

Acc Chem Res. 2008 Aug;41(8):1027-35. doi: 10.1021/ar800050c. Epub 2008 Jul 25. Review.

PMID:
18652494
[PubMed - indexed for MEDLINE]
5.

A chemo-genetic approach for the study of nucleobase participation in nucleolytic ribozymes.

Lilley DM.

Biol Chem. 2007 Jul;388(7):699-704. Review.

PMID:
17570822
[PubMed - indexed for MEDLINE]
6.

RNA folding and the origins of catalytic activity in the hairpin ribozyme.

Wilson TJ, Nahas M, Araki L, Harusawa S, Ha T, Lilley DM.

Blood Cells Mol Dis. 2007 Jan-Feb;38(1):8-14. Epub 2006 Dec 4. Review.

PMID:
17150385
[PubMed - indexed for MEDLINE]
7.

Structure and function of the small ribozymes.

Butcher SE.

Curr Opin Struct Biol. 2001 Jun;11(3):315-20. Review.

PMID:
11406380
[PubMed - indexed for MEDLINE]
8.

Metal ion binding and function in natural and artificial small RNA enzymes from a structural perspective.

Wedekind JE.

Met Ions Life Sci. 2011;9:299-345. Review.

PMID:
22010277
[PubMed - indexed for MEDLINE]
9.

Catalysis by the nucleolytic ribozymes.

Lilley DM.

Biochem Soc Trans. 2011 Apr;39(2):641-6. doi: 10.1042/BST0390641. Review.

PMID:
21428954
[PubMed - indexed for MEDLINE]
10.

The catalytic mechanism of the hairpin ribozyme.

Fedor MJ.

Biochem Soc Trans. 2002 Nov;30(Pt 6):1109-15. Review.

PMID:
12440984
[PubMed - indexed for MEDLINE]
11.

Recent advances in the elucidation of the mechanisms of action of ribozymes.

Takagi Y, Warashina M, Stec WJ, Yoshinari K, Taira K.

Nucleic Acids Res. 2001 May 1;29(9):1815-34. Review.

PMID:
11328865
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RNA folding and catalysis.

Lilley DM.

Genetica. 1999;106(1-2):95-102. Review.

PMID:
10710715
[PubMed - indexed for MEDLINE]
13.

Structure and function of the hairpin ribozyme.

Fedor MJ.

J Mol Biol. 2000 Mar 24;297(2):269-91. Review.

PMID:
10715200
[PubMed - indexed for MEDLINE]
14.

The hairpin ribozyme: from crystal structure to function.

Ferré-D'amaré AR, Rupert PB.

Biochem Soc Trans. 2002 Nov;30(Pt 6):1105-9. Review.

PMID:
12440983
[PubMed - indexed for MEDLINE]
15.

Folding and catalysis of the hairpin ribozyme.

Wilson TJ, Nahas M, Ha T, Lilley DM.

Biochem Soc Trans. 2005 Jun;33(Pt 3):461-5. Review.

PMID:
15916541
[PubMed - indexed for MEDLINE]
16.

The many faces of the hairpin ribozyme: structural and functional variants of a small catalytic RNA.

Müller S, Appel B, Krellenberg T, Petkovic S.

IUBMB Life. 2012 Jan;64(1):36-47. doi: 10.1002/iub.575. Epub 2011 Nov 30. Review.

PMID:
22131309
[PubMed - indexed for MEDLINE]
17.

Experimental analyses of the chemical dynamics of ribozyme catalysis.

Harris ME, Cassano AG.

Curr Opin Chem Biol. 2008 Dec;12(6):626-39. doi: 10.1016/j.cbpa.2008.10.005. Epub 2008 Oct 24. Review.

PMID:
18952193
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Folding and catalysis by the hairpin ribozyme.

Lilley DM.

FEBS Lett. 1999 Jun 4;452(1-2):26-30. Review.

PMID:
10376672
[PubMed - indexed for MEDLINE]
Free Article
19.

Linkage between proton binding and folding in RNA: implications for RNA catalysis.

Bevilacqua PC, Brown TS, Chadalavada D, Lecomte J, Moody E, Nakano SI.

Biochem Soc Trans. 2005 Jun;33(Pt 3):466-70. Review.

PMID:
15916542
[PubMed - indexed for MEDLINE]

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