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Results: 1 to 20 of 31

1.

Reduction techniques for network validation in systems biology.

Ackermann J, Einloft J, Nöthen J, Koch I.

J Theor Biol. 2012 Dec 21;315:71-80. doi: 10.1016/j.jtbi.2012.08.042. Epub 2012 Sep 13.

PMID:
22982289
[PubMed - indexed for MEDLINE]
2.

Detecting structural invariants in biological reaction networks.

Behre J, de Figueiredo LF, Schuster S, Kaleta C.

Methods Mol Biol. 2012;804:377-407. doi: 10.1007/978-1-61779-361-5_20. Review.

PMID:
22144164
[PubMed - indexed for MEDLINE]
3.

Genome-scale metabolic models of Saccharomyces cerevisiae.

Nookaew I, Olivares-Hernández R, Bhumiratana S, Nielsen J.

Methods Mol Biol. 2011;759:445-63. doi: 10.1007/978-1-61779-173-4_25. Review.

PMID:
21863502
[PubMed - indexed for MEDLINE]
4.

Genome-scale metabolic networks.

Terzer M, Maynard ND, Covert MW, Stelling J.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):285-97. doi: 10.1002/wsbm.37. Review.

PMID:
20835998
[PubMed - indexed for MEDLINE]
5.

Algorithmic and analytical methods in network biology.

Koyutürk M.

Wiley Interdiscip Rev Syst Biol Med. 2010 May-Jun;2(3):277-92. doi: 10.1002/wsbm.61. Review.

PMID:
20836029
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks.

Soh KC, Miskovic L, Hatzimanikatis V.

FEMS Yeast Res. 2012 Mar;12(2):129-43. doi: 10.1111/j.1567-1364.2011.00771.x. Epub 2011 Dec 19. Review.

PMID:
22129227
[PubMed - indexed for MEDLINE]
7.

Boolean network models of cellular regulation: prospects and limitations.

Bornholdt S.

J R Soc Interface. 2008 Aug 6;5 Suppl 1:S85-94. doi: 10.1098/rsif.2008.0132.focus. Review.

PMID:
18508746
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Use of randomized sampling for analysis of metabolic networks.

Schellenberger J, Palsson BØ.

J Biol Chem. 2009 Feb 27;284(9):5457-61. doi: 10.1074/jbc.R800048200. Epub 2008 Oct 20. Review.

PMID:
18940807
[PubMed - indexed for MEDLINE]
Free Article
9.

Zooming in on yeast osmoadaptation.

Kühn C, Klipp E.

Adv Exp Med Biol. 2012;736:293-310. doi: 10.1007/978-1-4419-7210-1_17. Review.

PMID:
22161336
[PubMed - indexed for MEDLINE]
10.

13C metabolic flux analysis in complex systems.

Zamboni N.

Curr Opin Biotechnol. 2011 Feb;22(1):103-8. doi: 10.1016/j.copbio.2010.08.009. Epub 2010 Sep 15. Review.

PMID:
20833526
[PubMed - indexed for MEDLINE]
11.

The markup is the model: reasoning about systems biology models in the Semantic Web era.

Kell DB, Mendes P.

J Theor Biol. 2008 Jun 7;252(3):538-43. Epub 2007 Dec 3. Review.

PMID:
18054049
[PubMed - indexed for MEDLINE]
12.

Modular analysis of biological networks.

Kaltenbach HM, Stelling J.

Adv Exp Med Biol. 2012;736:3-17. doi: 10.1007/978-1-4419-7210-1_1. Review.

PMID:
22161320
[PubMed - indexed for MEDLINE]
13.

Metabolic network modeling and simulation for drug targeting and discovery.

Kim HU, Sohn SB, Lee SY.

Biotechnol J. 2012 Mar;7(3):330-42. doi: 10.1002/biot.201100159. Epub 2011 Nov 29. Review.

PMID:
22125297
[PubMed - indexed for MEDLINE]
14.

Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.

van Riel NA.

Brief Bioinform. 2006 Dec;7(4):364-74. Epub 2006 Nov 14. Review.

PMID:
17107967
[PubMed - indexed for MEDLINE]
Free Article
15.

Prospects of yeast systems biology for human health: integrating lipid, protein and energy metabolism.

Petranovic D, Tyo K, Vemuri GN, Nielsen J.

FEMS Yeast Res. 2010 Dec;10(8):1046-59. doi: 10.1111/j.1567-1364.2010.00689.x. Epub 2010 Oct 26. Review.

PMID:
20977625
[PubMed - indexed for MEDLINE]
16.

Understanding human metabolic physiology: a genome-to-systems approach.

Mo ML, Palsson BØ.

Trends Biotechnol. 2009 Jan;27(1):37-44. doi: 10.1016/j.tibtech.2008.09.007. Epub 2008 Nov 17. Review.

PMID:
19010556
[PubMed - indexed for MEDLINE]
17.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Epub 2008 Dec 27. Review.

PMID:
19150482
[PubMed - indexed for MEDLINE]
18.

Molecular networks and system-level properties.

Alberghina L, Höfer T, Vanoni M.

J Biotechnol. 2009 Nov;144(3):224-33. doi: 10.1016/j.jbiotec.2009.07.009. Epub 2009 Jul 17. Review.

PMID:
19616593
[PubMed - indexed for MEDLINE]
19.

A survey on methods for modeling and analyzing integrated biological networks.

Tenazinha N, Vinga S.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):943-58. doi: 10.1109/TCBB.2010.117. Review.

PMID:
21116043
[PubMed - indexed for MEDLINE]
20.

Yeast systems biology: the challenge of eukaryotic complexity.

Castrillo JI, Oliver SG.

Methods Mol Biol. 2011;759:3-28. doi: 10.1007/978-1-61779-173-4_1. Review.

PMID:
21863478
[PubMed - indexed for MEDLINE]

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