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Items: 17

1.

Concept annotation in the CRAFT corpus.

Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE.

BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161.

2.

Natural Language Processing methods and systems for biomedical ontology learning.

Liu K, Hogan WR, Crowley RS.

J Biomed Inform. 2011 Feb;44(1):163-79. doi: 10.1016/j.jbi.2010.07.006. Epub 2010 Jul 18. Review.

3.

Biomedical ontologies: a functional perspective.

Rubin DL, Shah NH, Noy NF.

Brief Bioinform. 2008 Jan;9(1):75-90. Epub 2007 Dec 12. Review.

4.

Two biomedical sublanguages: a description based on the theories of Zellig Harris.

Friedman C, Kra P, Rzhetsky A.

J Biomed Inform. 2002 Aug;35(4):222-35. Review.

PMID:
12755517
5.

Mapping of biomedical text to concepts of lexicons, terminologies, and ontologies.

Bada M.

Methods Mol Biol. 2014;1159:33-45. doi: 10.1007/978-1-4939-0709-0_3. Review.

PMID:
24788260
6.

A survey of current work in biomedical text mining.

Cohen AM, Hersh WR.

Brief Bioinform. 2005 Mar;6(1):57-71. Review.

7.

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M.

Brief Bioinform. 2008 Nov;9(6):466-78. doi: 10.1093/bib/bbn043. Epub 2008 Dec 6. Review.

8.

BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014. Review.

9.

Exploitation of ontological resources for scientific literature analysis: searching genes and related diseases.

Jimeno-Yepes A, Berlanga-Llavori R, Rebholz-Schuhmann D.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:7073-8. doi: 10.1109/IEMBS.2009.5333359. Review.

PMID:
19964204
10.

Empirical distributional semantics: methods and biomedical applications.

Cohen T, Widdows D.

J Biomed Inform. 2009 Apr;42(2):390-405. doi: 10.1016/j.jbi.2009.02.002. Epub 2009 Feb 14. Review.

11.

How to learn about gene function: text-mining or ontologies?

Soldatos TG, Perdigão N, Brown NP, Sabir KS, O'Donoghue SI.

Methods. 2015 Mar;74:3-15. doi: 10.1016/j.ymeth.2014.07.004. Epub 2014 Aug 1. Review.

PMID:
25088781
12.

A survey on annotation tools for the biomedical literature.

Neves M, Leser U.

Brief Bioinform. 2014 Mar;15(2):327-40. doi: 10.1093/bib/bbs084. Epub 2012 Dec 18. Review.

PMID:
23255168
13.

Frontiers of biomedical text mining: current progress.

Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB.

Brief Bioinform. 2007 Sep;8(5):358-75. Epub 2007 Oct 30. Review.

14.

Text mining for drug-drug interaction.

Wu HY, Chiang CW, Li L.

Methods Mol Biol. 2014;1159:47-75. doi: 10.1007/978-1-4939-0709-0_4. Review.

15.

The landscape for epigenetic/epigenomic biomedical resources.

Shakya K, O'Connell MJ, Ruskin HJ.

Epigenetics. 2012 Sep;7(9):982-6. Epub 2012 Aug 9. Review.

16.

Biological information extraction and co-occurrence analysis.

Pavlopoulos GA, Promponas VJ, Ouzounis CA, Iliopoulos I.

Methods Mol Biol. 2014;1159:77-92. doi: 10.1007/978-1-4939-0709-0_5. Review.

PMID:
24788262
17.

From concept representations to ontologies: a paradigm shift in health informatics?

Schulz S, Balkanyi L, Cornet R, Bodenreider O.

Healthc Inform Res. 2013 Dec;19(4):235-42. doi: 10.4258/hir.2013.19.4.235. Epub 2013 Dec 31. Review.

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