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Results: 13

Related Articles by Review for PubMed (Select 22312447)

1.

Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.

Seok J, Xu W, Jiang H, Davis RW, Xiao W.

PLoS One. 2012;7(2):e31440. doi: 10.1371/journal.pone.0031440. Epub 2012 Feb 1.

2.

Next-generation transcriptome assembly.

Martin JA, Wang Z.

Nat Rev Genet. 2011 Sep 7;12(10):671-82. doi: 10.1038/nrg3068. Review.

PMID:
21897427
3.

Overview of available methods for diverse RNA-Seq data analyses.

Chen G, Wang C, Shi T.

Sci China Life Sci. 2011 Dec;54(12):1121-8. doi: 10.1007/s11427-011-4255-x. Epub 2012 Jan 7. Review.

PMID:
22227904
4.

Genome-guided transcriptome assembly in the age of next-generation sequencing.

Florea LD, Salzberg SL.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1234-40. Review.

5.

EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

6.

RNA sequencing: current and prospective uses in metabolic research.

Vikman P, Fadista J, Oskolkov N.

J Mol Endocrinol. 2014 Oct;53(2):R93-101. doi: 10.1530/JME-14-0170. Review.

7.

Computational methods for transcriptome annotation and quantification using RNA-seq.

Garber M, Grabherr MG, Guttman M, Trapnell C.

Nat Methods. 2011 Jun;8(6):469-77. doi: 10.1038/nmeth.1613. Epub 2011 May 27. Review. Erratum in: Nat Methods. 2011 Jun;8(6):following 477.

PMID:
21623353
8.

RNA sequencing: from tag-based profiling to resolving complete transcript structure.

de Klerk E, den Dunnen JT, 't Hoen PA.

Cell Mol Life Sci. 2014 Sep;71(18):3537-51. doi: 10.1007/s00018-014-1637-9. Epub 2014 May 15. Review.

9.

Complexities of gammaherpesvirus transcription revealed by microarrays and RNAseq.

Krug LT.

Curr Opin Virol. 2013 Jun;3(3):276-84. doi: 10.1016/j.coviro.2013.04.006. Epub 2013 May 16. Review.

10.

The technology and biology of single-cell RNA sequencing.

Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA.

Mol Cell. 2015 May 21;58(4):610-20. doi: 10.1016/j.molcel.2015.04.005. Review.

PMID:
26000846
11.

The emerging era of genomic data integration for analyzing splice isoform function.

Li HD, Menon R, Omenn GS, Guan Y.

Trends Genet. 2014 Aug;30(8):340-7. doi: 10.1016/j.tig.2014.05.005. Epub 2014 Jun 17. Review.

12.

Gene expression profiling of the brain: pondering facts and fiction.

Mitchell AC, Mirnics K.

Neurobiol Dis. 2012 Jan;45(1):3-7. doi: 10.1016/j.nbd.2011.06.001. Epub 2011 Jun 14. Review.

13.

Pushing the annotation of cellular activities to a higher resolution: Predicting functions at the isoform level.

Li W, Liu CC, Kang S, Li JR, Tseng YT, Zhou XJ.

Methods. 2015 Jul 31. pii: S1046-2023(15)30037-2. doi: 10.1016/j.ymeth.2015.07.016. [Epub ahead of print] Review.

PMID:
26238263
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