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Items: 10

1.

A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA.

Bishop EP, Rohs R, Parker SC, West SM, Liu P, Mann RS, Honig B, Tullius TD.

ACS Chem Biol. 2011 Dec 16;6(12):1314-20. doi: 10.1021/cb200155t. Epub 2011 Oct 13.

2.

What drives proteins into the major or minor grooves of DNA?

Privalov PL, Dragan AI, Crane-Robinson C, Breslauer KJ, Remeta DP, Minetti CA.

J Mol Biol. 2007 Jan 5;365(1):1-9. Epub 2006 Sep 27. Review.

3.

Probing DNA structure with hydroxyl radicals.

Tullius TD.

Curr Protoc Nucleic Acid Chem. 2002 Feb;Chapter 6:Unit 6.7. doi: 10.1002/0471142700.nc0607s07. Review.

PMID:
18428898
4.

DNA shape, genetic codes, and evolution.

Parker SC, Tullius TD.

Curr Opin Struct Biol. 2011 Jun;21(3):342-7. doi: 10.1016/j.sbi.2011.03.002. Epub 2011 Mar 23. Review.

5.

Structural dynamics of nucleosomes at single-molecule resolution.

Choy JS, Lee TH.

Trends Biochem Sci. 2012 Oct;37(10):425-35. doi: 10.1016/j.tibs.2012.06.006. Epub 2012 Jul 23. Review.

6.

Mapping nucleic acid structure by hydroxyl radical cleavage.

Tullius TD, Greenbaum JA.

Curr Opin Chem Biol. 2005 Apr;9(2):127-34. Review.

PMID:
15811796
7.

Origins of specificity in protein-DNA recognition.

Rohs R, Jin X, West SM, Joshi R, Honig B, Mann RS.

Annu Rev Biochem. 2010;79:233-69. doi: 10.1146/annurev-biochem-060408-091030. Review.

8.

DNA recognition by beta-sheets.

Tateno M, Yamasaki K, Amano N, Kakinuma J, Koike H, Allen MD, Suzuki M.

Biopolymers. 1997;44(4):335-59. Review.

PMID:
9782775
9.

DNA structure: cations in charge?

McFail-Isom L, Sines CC, Williams LD.

Curr Opin Struct Biol. 1999 Jun;9(3):298-304. Review.

PMID:
10361089
10.

Mapping protein-ligand interactions by hydroxyl-radical protein footprinting.

Loizos N.

Methods Mol Biol. 2004;261:199-210. Review.

PMID:
15064460
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