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Links from PubMed

Items: 4

1.

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.

Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF.

Genome Biol. 2011;12(5):R44. doi: 10.1186/gb-2011-12-5-r44. Epub 2011 May 19.

2.

Reference databases for taxonomic assignment in metagenomics.

Santamaria M, Fosso B, Consiglio A, De Caro G, Grillo G, Licciulli F, Liuni S, Marzano M, Alonso-Alemany D, Valiente G, Pesole G.

Brief Bioinform. 2012 Nov;13(6):682-95. doi: 10.1093/bib/bbs036. Epub 2012 Jul 10. Review.

3.

Microbial phylogeny and diversity: small subunit ribosomal RNA sequence analysis and beyond.

Rajendhran J, Gunasekaran P.

Microbiol Res. 2011 Feb 20;166(2):99-110. doi: 10.1016/j.micres.2010.02.003. Epub 2010 Mar 11. Review.

4.

New methods for inferring population dynamics from microbial sequences.

Pérez-Losada M, Porter ML, Tazi L, Crandall KA.

Infect Genet Evol. 2007 Jan;7(1):24-43. Epub 2006 Apr 19. Review.

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