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Items: 1 to 20 of 30

1.

Faster than neutral evolution of constrained sequences: the complex interplay of mutational biases and weak selection.

Lawrie DS, Petrov DA, Messer PW.

Genome Biol Evol. 2011;3:383-95. doi: 10.1093/gbe/evr032. Epub 2011 Apr 17.

2.

DNA sequence evolution: the sounds of silence.

Sharp PM, Averof M, Lloyd AT, Matassi G, Peden JF.

Philos Trans R Soc Lond B Biol Sci. 1995 Sep 29;349(1329):241-7. Review.

PMID:
8577834
3.

Comparative genomics and the study of evolution by natural selection.

Ellegren H.

Mol Ecol. 2008 Nov;17(21):4586-96. doi: 10.1111/j.1365-294X.2008.03954.x. Review.

PMID:
19140982
4.

Climbing mount probable: mutation as a cause of nonrandomness in evolution.

Stoltzfus A, Yampolsky LY.

J Hered. 2009 Sep-Oct;100(5):637-47. doi: 10.1093/jhered/esp048. Epub 2009 Jul 22. Review.

5.

Weak selection and protein evolution.

Akashi H, Osada N, Ohta T.

Genetics. 2012 Sep;192(1):15-31. doi: 10.1534/genetics.112.140178. Review.

6.

Compositional patterns in vertebrate genomes: conservation and change in evolution.

Bernardi G, Mouchiroud D, Gautier C, Bernardi G.

J Mol Evol. 1988 Dec-1989 Feb;28(1-2):7-18. Review.

PMID:
3148744
7.

Hearing silence: non-neutral evolution at synonymous sites in mammals.

Chamary JV, Parmley JL, Hurst LD.

Nat Rev Genet. 2006 Feb;7(2):98-108. Review.

PMID:
16418745
8.

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution.

Galtier N, Duret L.

Trends Genet. 2007 Jun;23(6):273-7. Epub 2007 Apr 5. Review.

PMID:
17418442
9.

Raising the estimate of functional human sequences.

Pheasant M, Mattick JS.

Genome Res. 2007 Sep;17(9):1245-53. Epub 2007 Aug 9. Review.

10.

The mystery of extreme non-coding conservation.

Harmston N, Baresic A, Lenhard B.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130021. doi: 10.1098/rstb.2013.0021. Print 2013 Dec 19. Review. Erratum in: Philos Trans R Soc Lond B Biol Sci. 2015 May 5;370(1667). pii: 20150064. doi: 10.1098/rstb.2015.0064.

11.

Sequence divergence, functional constraint, and selection in protein evolution.

Fay JC, Wu CI.

Annu Rev Genomics Hum Genet. 2003;4:213-35. Review.

PMID:
14527302
12.

Statistical tests of selective neutrality in the age of genomics.

Nielsen R.

Heredity (Edinb). 2001 Jun;86(Pt 6):641-7. Review.

PMID:
11595044
13.
14.

A surrogate approach to study the evolution of noncoding DNA elements that organize eukaryotic genomes.

Vermaak D, Bayes JJ, Malik HS.

J Hered. 2009 Sep-Oct;100(5):624-36. doi: 10.1093/jhered/esp063. Epub 2009 Jul 27. Review.

15.

Nonadaptive processes in primate and human evolution.

Harris EE.

Am J Phys Anthropol. 2010;143 Suppl 51:13-45. doi: 10.1002/ajpa.21439. Review. Erratum in: Am J Phys Anthropol. 2011;146 Suppl 53:155.

PMID:
21086525
16.

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences.

Ngandu NK, Scheffler K, Moore P, Woodman Z, Martin D, Seoighe C.

Virol J. 2008 Dec 23;5:160. doi: 10.1186/1743-422X-5-160. Review.

17.

Comparative population genomics: power and principles for the inference of functionality.

Lawrie DS, Petrov DA.

Trends Genet. 2014 Apr;30(4):133-9. doi: 10.1016/j.tig.2014.02.002. Epub 2014 Mar 20. Review.

18.

Endosymbiont evolution: predictions from theory and surprises from genomes.

Wernegreen JJ.

Ann N Y Acad Sci. 2015 Dec;1360:16-35. doi: 10.1111/nyas.12740. Epub 2015 Apr 9. Review.

PMID:
25866055
19.

What fraction of the human genome is functional?

Ponting CP, Hardison RC.

Genome Res. 2011 Nov;21(11):1769-76. doi: 10.1101/gr.116814.110. Epub 2011 Aug 29. Review.

20.

Near neutrality: leading edge of the neutral theory of molecular evolution.

Hughes AL.

Ann N Y Acad Sci. 2008;1133:162-79. doi: 10.1196/annals.1438.001. Review.

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