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Items: 11

1.

Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees.

Wu D, Wu M, Halpern A, Rusch DB, Yooseph S, Frazier M, Venter JC, Eisen JA.

PLoS One. 2011 Mar 18;6(3):e18011. doi: 10.1371/journal.pone.0018011.

2.

Ribosomal RNA and the major lines of evolution: a perspective.

Ragan MA.

Biosystems. 1988;21(3-4):177-87. Review.

PMID:
3293666
3.

Metagenomic gene discovery: how far have we moved into novel sequence space?

Tuffin M, Anderson D, Heath C, Cowan DA.

Biotechnol J. 2009 Dec;4(12):1671-83. doi: 10.1002/biot.200900235. Review.

PMID:
19946882
4.

Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups.

Gupta RS, Bhandari V.

Antonie Van Leeuwenhoek. 2011 Jun;100(1):1-34. doi: 10.1007/s10482-011-9576-z. Epub 2011 Apr 19. Review.

PMID:
21503713
5.

The evolutionary relationships among known life forms.

Cedergren R, Gray MW, Abel Y, Sankoff D.

J Mol Evol. 1988 Dec-1989 Feb;28(1-2):98-112. Review.

PMID:
3148747
7.

The tree of life viewed through the contents of genomes.

House CH.

Methods Mol Biol. 2009;532:141-61. doi: 10.1007/978-1-60327-853-9_8. Review.

PMID:
19271183
8.

Microbial metagenomics: beyond the genome.

Gilbert JA, Dupont CL.

Ann Rev Mar Sci. 2011;3:347-71. Review.

PMID:
21329209
9.

Functional assignment of metagenomic data: challenges and applications.

Prakash T, Taylor TD.

Brief Bioinform. 2012 Nov;13(6):711-27. doi: 10.1093/bib/bbs033. Epub 2012 Jul 6. Review.

10.

Metagenomics and the protein universe.

Godzik A.

Curr Opin Struct Biol. 2011 Jun;21(3):398-403. doi: 10.1016/j.sbi.2011.03.010. Epub 2011 Apr 14. Review.

11.

Metagenomic technology and genome mining: emerging areas for exploring novel nitrilases.

Gong JS, Lu ZM, Li H, Zhou ZM, Shi JS, Xu ZH.

Appl Microbiol Biotechnol. 2013 Aug;97(15):6603-11. doi: 10.1007/s00253-013-4932-8. Epub 2013 Jun 26. Review.

PMID:
23801047
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