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Results: 16

Related Articles by Review for PubMed (Select 20932289)

1.

Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA.

Homer N, Nelson SF.

Genome Biol. 2010;11(10):R99. doi: 10.1186/gb-2010-11-10-r99. Epub 2010 Oct 8.

2.

A survey of sequence alignment algorithms for next-generation sequencing.

Li H, Homer N.

Brief Bioinform. 2010 Sep;11(5):473-83. doi: 10.1093/bib/bbq015. Epub 2010 May 11. Review.

3.

Computational methods for discovering structural variation with next-generation sequencing.

Medvedev P, Stanciu M, Brudno M.

Nat Methods. 2009 Nov;6(11 Suppl):S13-20. doi: 10.1038/nmeth.1374. Review.

PMID:
19844226
4.

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

Horner DS, Pavesi G, Castrignanò T, De Meo PD, Liuni S, Sammeth M, Picardi E, Pesole G.

Brief Bioinform. 2010 Mar;11(2):181-97. doi: 10.1093/bib/bbp046. Epub 2009 Oct 27. Review.

5.

Computational and bioinformatics frameworks for next-generation whole exome and genome sequencing.

Dolled-Filhart MP, Lee M Jr, Ou-Yang CW, Haraksingh RR, Lin JC.

ScientificWorldJournal. 2013;2013:730210. doi: 10.1155/2013/730210. Epub 2013 Jan 13. Review.

6.

Repetitive DNA and next-generation sequencing: computational challenges and solutions.

Treangen TJ, Salzberg SL.

Nat Rev Genet. 2011 Nov 29;13(1):36-46. doi: 10.1038/nrg3117. Review. Erratum in: Nat Rev Genet. 2012 Feb;13(2):146.

7.

The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

Droege M, Hill B.

J Biotechnol. 2008 Aug 31;136(1-2):3-10. doi: 10.1016/j.jbiotec.2008.03.021. Epub 2008 Jun 21. Review.

PMID:
18616967
8.

Sense from sequence reads: methods for alignment and assembly.

Flicek P, Birney E.

Nat Methods. 2009 Nov;6(11 Suppl):S6-S12. doi: 10.1038/nmeth.1376. Review.

PMID:
19844229
9.

De novo assembly of short sequence reads.

Paszkiewicz K, Studholme DJ.

Brief Bioinform. 2010 Sep;11(5):457-72. doi: 10.1093/bib/bbq020. Epub 2010 Aug 19. Review.

10.

State of the art de novo assembly of human genomes from massively parallel sequencing data.

Li Y, Hu Y, Bolund L, Wang J.

Hum Genomics. 2010 Apr;4(4):271-7. Review.

11.
12.

Discovering genetic polymorphisms in next-generation sequencing data.

Imelfort M, Duran C, Batley J, Edwards D.

Plant Biotechnol J. 2009 May;7(4):312-7. doi: 10.1111/j.1467-7652.2009.00406.x. Review.

PMID:
19386039
13.

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.

Song K, Ren J, Reinert G, Deng M, Waterman MS, Sun F.

Brief Bioinform. 2014 May;15(3):343-53. doi: 10.1093/bib/bbt067. Epub 2013 Sep 23. Review.

14.

Next-generation sequence assembly: four stages of data processing and computational challenges.

El-Metwally S, Hamza T, Zakaria M, Helmy M.

PLoS Comput Biol. 2013;9(12):e1003345. doi: 10.1371/journal.pcbi.1003345. Epub 2013 Dec 12. Review.

15.

Bioinformatics for clinical next generation sequencing.

Oliver GR, Hart SN, Klee EW.

Clin Chem. 2015 Jan;61(1):124-35. doi: 10.1373/clinchem.2014.224360. Epub 2014 Dec 1. Review.

PMID:
25451870
16.

A primer for disease gene prioritization using next-generation sequencing data.

Wang S, Xing J.

Genomics Inform. 2013 Dec;11(4):191-9. doi: 10.5808/GI.2013.11.4.191. Epub 2013 Dec 31. Review.

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