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Results: 1 to 20 of 21

1.

Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution.

Omelchenko MV, Galperin MY, Wolf YI, Koonin EV.

Biol Direct. 2010 Apr 30;5:31. doi: 10.1186/1745-6150-5-31.

PMID:
20433725
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomes.

Galperin MY, Koonin EV.

Genetica. 1999;106(1-2):159-70. Review.

PMID:
10710722
[PubMed - indexed for MEDLINE]
3.

Divergence and convergence in enzyme evolution.

Galperin MY, Koonin EV.

J Biol Chem. 2012 Jan 2;287(1):21-8. doi: 10.1074/jbc.R111.241976. Epub 2011 Nov 8. Review.

PMID:
22069324
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions.

Nagano N, Orengo CA, Thornton JM.

J Mol Biol. 2002 Aug 30;321(5):741-65. Review.

PMID:
12206759
[PubMed - indexed for MEDLINE]
5.

Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins.

Anantharaman V, Aravind L, Koonin EV.

Curr Opin Chem Biol. 2003 Feb;7(1):12-20. Review.

PMID:
12547421
[PubMed - indexed for MEDLINE]
6.

Evolutionary genomics of nucleo-cytoplasmic large DNA viruses.

Iyer LM, Balaji S, Koonin EV, Aravind L.

Virus Res. 2006 Apr;117(1):156-84. Epub 2006 Feb 21. Review.

PMID:
16494962
[PubMed - indexed for MEDLINE]
7.

Combining structural genomics and enzymology: completing the picture in metabolic pathways and enzyme active sites.

Erlandsen H, Abola EE, Stevens RC.

Curr Opin Struct Biol. 2000 Dec;10(6):719-30. Review.

PMID:
11114510
[PubMed - indexed for MEDLINE]
8.

Profiling the orphan enzymes.

Sorokina M, Stam M, Médigue C, Lespinet O, Vallenet D.

Biol Direct. 2014 Jun 6;9:10. doi: 10.1186/1745-6150-9-10. Review.

PMID:
24906382
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Microbial genomes and "missing" enzymes: redefining biochemical pathways.

Cordwell SJ.

Arch Microbiol. 1999 Nov;172(5):269-79. Review.

PMID:
10550468
[PubMed - indexed for MEDLINE]
10.

Pyridoxal phosphate enzymes: mechanistic, structural, and evolutionary considerations.

Eliot AC, Kirsch JF.

Annu Rev Biochem. 2004;73:383-415. Review.

PMID:
15189147
[PubMed - indexed for MEDLINE]
11.

Threonine aldolase and alanine racemase: novel examples of convergent evolution in the superfamily of vitamin B6-dependent enzymes.

Paiardini A, Contestabile R, D'Aguanno S, Pascarella S, Bossa F.

Biochim Biophys Acta. 2003 Apr 11;1647(1-2):214-9. Review.

PMID:
12686135
[PubMed - indexed for MEDLINE]
12.

Protein folds, functions and evolution.

Thornton JM, Orengo CA, Todd AE, Pearl FM.

J Mol Biol. 1999 Oct 22;293(2):333-42. Review.

PMID:
10529349
[PubMed - indexed for MEDLINE]
13.

Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life.

Prangishvili D, Garrett RA, Koonin EV.

Virus Res. 2006 Apr;117(1):52-67. Epub 2006 Feb 28. Review.

PMID:
16503363
[PubMed - indexed for MEDLINE]
14.

Enzyme genomics: Application of general enzymatic screens to discover new enzymes.

Kuznetsova E, Proudfoot M, Sanders SA, Reinking J, Savchenko A, Arrowsmith CH, Edwards AM, Yakunin AF.

FEMS Microbiol Rev. 2005 Apr;29(2):263-79. Review.

PMID:
15808744
[PubMed - indexed for MEDLINE]
15.

The molecular evolution of pyridoxal-5'-phosphate-dependent enzymes.

Mehta PK, Christen P.

Adv Enzymol Relat Areas Mol Biol. 2000;74:129-84. Review.

PMID:
10800595
[PubMed - indexed for MEDLINE]
16.

The TIM-barrel fold: a versatile framework for efficient enzymes.

Wierenga RK.

FEBS Lett. 2001 Mar 16;492(3):193-8. Review.

PMID:
11257493
[PubMed - indexed for MEDLINE]
Free Article
17.

Divergent evolution of (betaalpha)8-barrel enzymes.

Henn-Sax M, Höcker B, Wilmanns M, Sterner R.

Biol Chem. 2001 Sep;382(9):1315-20. Review.

PMID:
11688714
[PubMed - indexed for MEDLINE]
18.

'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it.

Hanson AD, Pribat A, Waller JC, de Crécy-Lagard V.

Biochem J. 2009 Dec 14;425(1):1-11. doi: 10.1042/BJ20091328. Review.

PMID:
20001958
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Enzyme promiscuity: a mechanistic and evolutionary perspective.

Khersonsky O, Tawfik DS.

Annu Rev Biochem. 2010;79:471-505. doi: 10.1146/annurev-biochem-030409-143718. Review.

PMID:
20235827
[PubMed - indexed for MEDLINE]
20.

[To the problem of proteolytic enzyme evolution].

Nemova NN, Bondareva LA.

Biomed Khim. 2008 Jan-Feb;54(1):42-57. Review. Russian.

PMID:
18421911
[PubMed - indexed for MEDLINE]

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