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Items: 12

1.

Distinguishing direct versus indirect transcription factor-DNA interactions.

Gordân R, Hartemink AJ, Bulyk ML.

Genome Res. 2009 Nov;19(11):2090-100. doi: 10.1101/gr.094144.109. Epub 2009 Aug 3.

2.

The different (sur)faces of Rap1p.

Piña B, Fernández-Larrea J, García-Reyero N, Idrissi FZ.

Mol Genet Genomics. 2003 Mar;268(6):791-8. Epub 2003 Jan 25. Review.

PMID:
12655405
3.

Genome-wide analysis of protein-DNA interactions in living cells.

Pugh BF, Gilmour DS.

Genome Biol. 2001;2(4):REVIEWS1013. Epub 2001 Apr 4. Review.

4.

[DNA-binding profiles of mammalian transcription factors].

Gu GM, Wang JK.

Yi Chuan. 2012 Aug;34(8):950-68. Review. Chinese.

PMID:
22917900
5.

DNA sequence motif: a jack of all trades for ChIP-Seq data.

Kulakovskiy IV, Makeev VJ.

Adv Protein Chem Struct Biol. 2013;91:135-71. doi: 10.1016/B978-0-12-411637-5.00005-6. Review.

PMID:
23790213
6.

ChIP-Seq and the complexity of bacterial transcriptional regulation.

Galagan J, Lyubetskaya A, Gomes A.

Curr Top Microbiol Immunol. 2013;363:43-68. doi: 10.1007/82_2012_257. Review.

PMID:
22983621
7.

Transcription Factor Binding Site Mapping Using ChIP-Seq.

Jaini S, Lyubetskaya A, Gomes A, Peterson M, Park ST, Raman S, Schoolnik G, Galagan J.

Microbiol Spectr. 2014 Apr;2(2). doi: 10.1128/microbiolspec.MGM2-0035-2013. Review.

PMID:
26105820
8.

Methods for Analysis of Transcription Factor DNA-Binding Specificity In Vitro.

Jolma A, Taipale J.

Subcell Biochem. 2011;52:155-73. doi: 10.1007/978-90-481-9069-0_7. Review.

PMID:
21557082
9.

Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells.

Boeva V.

Front Genet. 2016 Feb 23;7:24. doi: 10.3389/fgene.2016.00024. eCollection 2016. Review.

10.

Experimental strategies for studying transcription factor-DNA binding specificities.

Geertz M, Maerkl SJ.

Brief Funct Genomics. 2010 Dec;9(5-6):362-73. doi: 10.1093/bfgp/elq023. Epub 2010 Sep 23. Review.

11.

Chromatin Immunoprecipitation in Budding Yeast.

Tanaka T.

Mapping Protein/DNA Interactions by Cross-Linking [Internet]. Paris: Institut national de la santé et de la recherche médicale; 2001.

12.

The Genetics of Transcription Factor DNA Binding Variation.

Deplancke B, Alpern D, Gardeux V.

Cell. 2016 Jul 28;166(3):538-54. doi: 10.1016/j.cell.2016.07.012. Review.

PMID:
27471964
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