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Items: 18

1.

EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.

Barrasa MI, Vaglio P, Cavasino F, Jacotot L, Walhout AJ.

BMC Genomics. 2007 Jan 18;8:21.

2.

Gene-centered regulatory network mapping.

Walhout AJ.

Methods Cell Biol. 2011;106:271-88. doi: 10.1016/B978-0-12-544172-8.00010-4. Review.

3.

Global analysis of gene transcription regulation in prokaryotes.

Zhou D, Yang R.

Cell Mol Life Sci. 2006 Oct;63(19-20):2260-90. Review.

PMID:
16927028
4.

Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping.

Walhout AJ.

Genome Res. 2006 Dec;16(12):1445-54. Epub 2006 Oct 19. Review.

5.

Genetic analysis of ETS genes in C. elegans.

Hart AH, Reventar R, Bernstein A.

Oncogene. 2000 Dec 18;19(55):6400-8. Review.

6.

Advances in analysis of transcriptional regulatory networks.

Kim TM, Park PJ.

Wiley Interdiscip Rev Syst Biol Med. 2011 Jan-Feb;3(1):21-35. doi: 10.1002/wsbm.105. Review.

PMID:
21069662
7.

Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.

MuiƱo JM, Angenent GC, Kaufmann K.

Methods Mol Biol. 2011;754:293-305. doi: 10.1007/978-1-61779-154-3_17. Review.

PMID:
21720960
8.

POU domain factors in neural development.

Schonemann MD, Ryan AK, Erkman L, McEvilly RJ, Bermingham J, Rosenfeld MG.

Adv Exp Med Biol. 1998;449:39-53. Review.

PMID:
10026784
9.

Gene-centered regulatory networks.

Arda HE, Walhout AJ.

Brief Funct Genomics. 2010 Jan;9(1):4-12. doi: 10.1093/bfgp/elp049. Epub 2009 Dec 13. Review.

10.

Transcriptional regulation.

Okkema PG, Krause M.

WormBook. 2005 Dec 23:1-40. Review.

11.

Genome-wide analysis of protein-DNA interactions.

Kim TH, Ren B.

Annu Rev Genomics Hum Genet. 2006;7:81-102. Review.

PMID:
16722805
12.

Genomic location analysis by ChIP-Seq.

Barski A, Zhao K.

J Cell Biochem. 2009 May 1;107(1):11-8. doi: 10.1002/jcb.22077. Review.

13.

Putting numbers on the network connections.

Stormo GD, Zhao Y.

Bioessays. 2007 Aug;29(8):717-21. Review.

PMID:
17620328
14.

Developmental genomic approaches in model organisms.

Reinke V, White KP.

Annu Rev Genomics Hum Genet. 2002;3:153-78. Epub 2002 Apr 15. Review.

PMID:
12142361
15.

Genome-wide occupancy analysis by ChIP-chip and ChIP-Seq.

Hao H.

Adv Exp Med Biol. 2012;723:753-9. doi: 10.1007/978-1-4614-0631-0_96. Review. No abstract available.

PMID:
22183403
16.

Gene regulation.

Bina M.

Methods Mol Biol. 2013;977:1-11. doi: 10.1007/978-1-62703-284-1_1. Review.

PMID:
23436349
17.

Mechanisms of DNA-binding specificity and functional gene regulation by transcription factors.

Smith NC, Matthews JM.

Curr Opin Struct Biol. 2016 Jun 10;38:68-74. doi: 10.1016/j.sbi.2016.05.006. [Epub ahead of print] Review.

PMID:
27295424
18.

Using gene networks in EvoDevo analyses.

Sinha NR, Rowland SD, Ichihashi Y.

Curr Opin Plant Biol. 2016 Jul 22;33:133-139. doi: 10.1016/j.pbi.2016.06.016. [Epub ahead of print] Review.

PMID:
27455887
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