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Items: 10

1.

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.

McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D347-53. Epub 2006 Dec 1.

2.

In silico Reconstruction of the Metabolic and Pathogenic Potential of Bacterial Genomes Using Subsystems.

McNeil LK, Aziz RK.

Genome Dyn. 2009;6:21-34. doi: 10.1159/000235760. Epub 2009 Aug 19. Review.

PMID:
19696491
3.

Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence.

Vinatzer BA, Yan S.

Mol Plant Pathol. 2008 Jan;9(1):105-18. doi: 10.1111/j.1364-3703.2007.00438.x. Review.

PMID:
18705888
4.

Completely sequenced genomes of pathogenic bacteria: a review.

Guzmán E, Romeu A, Garcia-Vallve S.

Enferm Infecc Microbiol Clin. 2008 Feb;26(2):88-98. Review.

PMID:
18341921
5.

PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species.

Gillespie JJ, Wattam AR, Cammer SA, Gabbard JL, Shukla MP, Dalay O, Driscoll T, Hix D, Mane SP, Mao C, Nordberg EK, Scott M, Schulman JR, Snyder EE, Sullivan DE, Wang C, Warren A, Williams KP, Xue T, Yoo HS, Zhang C, Zhang Y, Will R, Kenyon RW, Sobral BW.

Infect Immun. 2011 Nov;79(11):4286-98. doi: 10.1128/IAI.00207-11. Epub 2011 Sep 6. Review.

6.

Software platforms to facilitate reconstructing genome-scale metabolic networks.

Hamilton JJ, Reed JL.

Environ Microbiol. 2014 Jan;16(1):49-59. doi: 10.1111/1462-2920.12312. Epub 2013 Nov 18. Review.

PMID:
24148076
7.

Current Advances in the Identification and Characterization of Putative Drug and Vaccine Targets in the Bacterial Genomes.

Shahbaaz M, Bisetty K, Ahmad F, Hassan MI.

Curr Top Med Chem. 2016;16(9):1040-69. Review.

PMID:
26303422
8.

The challenge of constructing, classifying, and representing metabolic pathways.

Caspi R, Dreher K, Karp PD.

FEMS Microbiol Lett. 2013 Aug;345(2):85-93. doi: 10.1111/1574-6968.12194. Epub 2013 Jun 27. Review.

9.

Reconstruction of biochemical networks in microorganisms.

Feist AM, Herrgård MJ, Thiele I, Reed JL, Palsson BØ.

Nat Rev Microbiol. 2009 Feb;7(2):129-43. doi: 10.1038/nrmicro1949. Epub 2008 Dec 31. Review.

10.

The impact of microbial genomics on antimicrobial drug development.

Tang CM, Moxon ER.

Annu Rev Genomics Hum Genet. 2001;2:259-69. Review.

PMID:
11701651
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