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Links from PubMed

Items: 8

1.

GENCODE: producing a reference annotation for ENCODE.

Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R.

Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.

2.

EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

3.

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.

Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.

Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.

4.

Has the yo-yo stopped? An assessment of human protein-coding gene number.

Southan C.

Proteomics. 2004 Jun;4(6):1712-26. Review.

5.

The genome browser at UCSC for locating genes, and much more!

Bina M.

Mol Biotechnol. 2008 Mar;38(3):269-75. Epub 2007 Dec 4. Review.

PMID:
18058261
6.

Annotating non-coding regions of the genome.

Alexander RP, Fang G, Rozowsky J, Snyder M, Gerstein MB.

Nat Rev Genet. 2010 Aug;11(8):559-71. doi: 10.1038/nrg2814. Epub 2010 Jul 13. Review.

PMID:
20628352
7.

From genome sequencing to bedside. Findings from the section on bioinformatics and translational informatics.

Lecroq T, Soualmia LF; Section Editors for the IMIA Yearbook Section on Bioinformatics and Translational Informatics.

Yearb Med Inform. 2013;8:175-7. Review.

PMID:
23974568
8.

Identifying protein-coding genes in genomic sequences.

Harrow J, Nagy A, Reymond A, Alioto T, Patthy L, Antonarakis SE, Guigó R.

Genome Biol. 2009;10(1):201. doi: 10.1186/gb-2009-10-1-201. Epub 2009 Jan 30. Review.

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