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Results: 1 to 20 of 24

1.

Protein family classification and functional annotation.

Wu CH, Huang H, Yeh LS, Barker WC.

Comput Biol Chem. 2003 Feb;27(1):37-47. Review.

PMID:
12798038
[PubMed - indexed for MEDLINE]
2.

The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools.

Schneider M, Tognolli M, Bairoch A.

Plant Physiol Biochem. 2004 Dec;42(12):1013-21. Epub 2004 Dec 15. Review.

PMID:
15707838
[PubMed - indexed for MEDLINE]
3.

Update on genome completion and annotations: Protein Information Resource.

Wu C, Nebert DW.

Hum Genomics. 2004 Mar;1(3):229-33. Review.

PMID:
15588483
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The apoptosis database.

Doctor KS, Reed JC, Godzik A, Bourne PE.

Cell Death Differ. 2003 Jun;10(6):621-33. Review.

PMID:
12761571
[PubMed - indexed for MEDLINE]
Free Article
5.

Predicting functions from protein sequences--where are the bottlenecks?

Bork P, Koonin EV.

Nat Genet. 1998 Apr;18(4):313-8. Review.

PMID:
9537411
[PubMed - indexed for MEDLINE]
6.

GAIA: framework annotation of genomic sequence.

Bailey LC Jr, Fischer S, Schug J, Crabtree J, Gibson M, Overton GC.

Genome Res. 1998 Mar;8(3):234-50. Review.

PMID:
9521927
[PubMed - indexed for MEDLINE]
Free Article
7.

In silico characterization of proteins: UniProt, InterPro and Integr8.

Mulder NJ, Kersey P, Pruess M, Apweiler R.

Mol Biotechnol. 2008 Feb;38(2):165-77. doi: 10.1007/s12033-007-9003-x. Epub 2007 Oct 4. Review.

PMID:
18219596
[PubMed - indexed for MEDLINE]
8.

The quest to deduce protein function from sequence: the role of pattern databases.

Attwood TK.

Int J Biochem Cell Biol. 2000 Feb;32(2):139-55. Review.

PMID:
10687950
[PubMed - indexed for MEDLINE]
9.

Automatic annotation of protein function.

Valencia A.

Curr Opin Struct Biol. 2005 Jun;15(3):267-74. Review.

PMID:
15922590
[PubMed - indexed for MEDLINE]
10.

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data.

Huang H, Hu ZZ, Arighi CN, Wu CH.

Front Biosci. 2007 Sep 1;12:5071-88. Review.

PMID:
17569631
[PubMed - indexed for MEDLINE]
11.

Sequence- and structure-based protein function prediction from genomic information.

Baxter SM, Fetrow JS.

Curr Opin Drug Discov Devel. 2001 May;4(3):291-5. Review.

PMID:
11560060
[PubMed - indexed for MEDLINE]
12.

Protein function annotation by homology-based inference.

Loewenstein Y, Raimondo D, Redfern OC, Watson J, Frishman D, Linial M, Orengo C, Thornton J, Tramontano A.

Genome Biol. 2009 Feb 2;10(2):207. doi: 10.1186/gb-2009-10-2-207. Review.

PMID:
19226439
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank.

Burkhardt K, Schneider B, Ory J.

PLoS Comput Biol. 2006 Oct 27;2(10):e99. Review. No abstract available.

PMID:
17069453
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bioinformatics for venom and toxin sciences.

Tan PT, Khan AM, Brusic V.

Brief Bioinform. 2003 Mar;4(1):53-62. Review.

PMID:
12715834
[PubMed - indexed for MEDLINE]
Free Article
15.

Conceptual data modelling for bioinformatics.

Bornberg-Bauer E, Paton NW.

Brief Bioinform. 2002 Jun;3(2):166-80. Review.

PMID:
12139436
[PubMed - indexed for MEDLINE]
Free Article
16.

Is protein classification necessary? Toward alternative approaches to function annotation.

Petrey D, Honig B.

Curr Opin Struct Biol. 2009 Jun;19(3):363-8. doi: 10.1016/j.sbi.2009.02.001. Epub 2009 Mar 5. Review.

PMID:
19269161
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Bioinformatics approaches for the classification of G-protein-coupled receptors.

Gaulton A, Attwood TK.

Curr Opin Pharmacol. 2003 Apr;3(2):114-20. Review.

PMID:
12681231
[PubMed - indexed for MEDLINE]
18.

[Getting functional information from your sequence by the use of protein signature databases].

Kobayashi K.

Tanpakushitsu Kakusan Koso. 2001 Nov;46(14):2098-103. Review. Japanese. No abstract available.

PMID:
11766615
[PubMed - indexed for MEDLINE]
19.

The past, present and future of genome-wide re-annotation.

Ouzounis CA, Karp PD.

Genome Biol. 2002;3(2):COMMENT2001. Epub 2002 Jan 31. Review.

PMID:
11864365
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Functional inferences from reconstructed evolutionary biology involving rectified databases--an evolutionarily grounded approach to functional genomics.

Benner SA, Chamberlin SG, Liberles DA, Govindarajan S, Knecht L.

Res Microbiol. 2000 Mar;151(2):97-106. Review.

PMID:
10865954
[PubMed - indexed for MEDLINE]

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