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Items: 1 to 20 of 200

1.

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.

Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh HJ, Tappu R.

PLoS Comput Biol. 2016 Jun 21;12(6):e1004957. doi: 10.1371/journal.pcbi.1004957. eCollection 2016 Jun.

2.

Capturing One of the Human Gut Microbiome's Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence Data.

Jeraldo P, Hernandez A, Nielsen HB, Chen X, White BA, Goldenfeld N, Nelson H, Alhquist D, Boardman L, Chia N.

Front Microbiol. 2016 May 26;7:783. doi: 10.3389/fmicb.2016.00783. eCollection 2016.

3.

Interconnected microbiomes and resistomes in low-income human habitats.

Pehrsson EC, Tsukayama P, Patel S, Mejía-Bautista M, Sosa-Soto G, Navarrete KM, Calderon M, Cabrera L, Hoyos-Arango W, Bertoli MT, Berg DE, Gilman RH, Dantas G.

Nature. 2016 May 11;533(7602):212-6. doi: 10.1038/nature17672.

PMID:
27172044
4.

Integrated (Meta) Genomic and Synthetic Biology Approaches to Develop New Biocatalysts.

Parages ML, Gutiérrez-Barranquero JA, Reen FJ, Dobson AD, O'Gara F.

Mar Drugs. 2016 Mar 21;14(3). pii: E62. doi: 10.3390/md14030062. Review.

6.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

7.

Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.

Sala C, Vitali S, Giampieri E, do Valle ÌF, Remondini D, Garagnani P, Bersanelli M, Mosca E, Milanesi L, Castellani G.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:16. doi: 10.1186/s12859-015-0858-8.

8.

ExoMeg1: a new exonuclease from metagenomic library.

Silva-Portela RC, Carvalho FM, Pereira CP, de Souza-Pinto NC, Modesti M, Fuchs RP, Agnez-Lima LF.

Sci Rep. 2016 Jan 27;6:19712. doi: 10.1038/srep19712.

9.

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics.

Jonsson V, Österlund T, Nerman O, Kristiansson E.

BMC Genomics. 2016 Jan 25;17:78. doi: 10.1186/s12864-016-2386-y.

10.

Characterization of a cold-active and salt tolerant esterase identified by functional screening of Arctic metagenomic libraries.

De Santi C, Altermark B, Pierechod MM, Ambrosino L, de Pascale D, Willassen NP.

BMC Biochem. 2016 Jan 19;17:1. doi: 10.1186/s12858-016-0057-x.

11.

Partial Least Squares Regression Can Aid in Detecting Differential Abundance of Multiple Features in Sets of Metagenomic Samples.

Libiger O, Schork NJ.

Front Genet. 2015 Dec 17;6:350. doi: 10.3389/fgene.2015.00350. eCollection 2015.

12.

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics.

Escobar-Zepeda A, Vera-Ponce de León A, Sanchez-Flores A.

Front Genet. 2015 Dec 17;6:348. doi: 10.3389/fgene.2015.00348. eCollection 2015. Review.

13.

Deep insights into carbohydrate metabolism in the rumen of Mehsani buffalo at different diet treatments.

Parmar NR, Nirmal Kumar JI, Joshi CG.

Genom Data. 2015 Aug 12;6:59-62. doi: 10.1016/j.gdata.2015.08.007. eCollection 2015 Dec.

14.

Metagenomics: Retrospect and Prospects in High Throughput Age.

Kumar S, Krishnani KK, Bhushan B, Brahmane MP.

Biotechnol Res Int. 2015;2015:121735. doi: 10.1155/2015/121735. Epub 2015 Nov 17. Review.

15.

Metagenomic Analysis of Upwelling-Affected Brazilian Coastal Seawater Reveals Sequence Domains of Type I PKS and Modular NRPS.

Cuadrat RR, Cury JC, Dávila AM.

Int J Mol Sci. 2015 Nov 27;16(12):28285-95. doi: 10.3390/ijms161226101.

16.

Web Resources for Metagenomics Studies.

Dudhagara P, Bhavsar S, Bhagat C, Ghelani A, Bhatt S, Patel R.

Genomics Proteomics Bioinformatics. 2015 Oct;13(5):296-303. doi: 10.1016/j.gpb.2015.10.003. Epub 2015 Nov 18. Review.

17.

EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data.

Mitchell A, Bucchini F, Cochrane G, Denise H, ten Hoopen P, Fraser M, Pesseat S, Potter S, Scheremetjew M, Sterk P, Finn RD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D595-603. doi: 10.1093/nar/gkv1195. Epub 2015 Nov 17.

18.

Marine Metagenome as A Resource for Novel Enzymes.

Alma'abadi AD, Gojobori T, Mineta K.

Genomics Proteomics Bioinformatics. 2015 Oct;13(5):290-5. doi: 10.1016/j.gpb.2015.10.001. Epub 2015 Nov 10. Review.

19.

Anvi'o: an advanced analysis and visualization platform for 'omics data.

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO.

PeerJ. 2015 Oct 8;3:e1319. doi: 10.7717/peerj.1319. eCollection 2015.

20.

Challenges of the Unknown: Clinical Application of Microbial Metagenomics.

Rose G, Wooldridge DJ, Anscombe C, Mee ET, Misra RV, Gharbia S.

Int J Genomics. 2015;2015:292950. doi: 10.1155/2015/292950. Epub 2015 Sep 14.

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