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Items: 1 to 20 of 22

1.

The role of negative selection in protein evolution revealed through the energetics of the native state ensemble.

Hoffmann J, Wrabl JO, Hilser VJ.

Proteins. 2016 Apr;84(4):435-47. doi: 10.1002/prot.24989. Epub 2016 Feb 13.

PMID:
26800099
2.

Characteristics and prediction of RNA structure.

Li H, Zhu D, Zhang C, Han H, Crandall KA.

Biomed Res Int. 2014;2014:690340. doi: 10.1155/2014/690340. Epub 2014 Jul 6.

3.

Dynamics of domain coverage of the protein sequence universe.

Rekapalli B, Wuichet K, Peterson GD, Zhulin IB.

BMC Genomics. 2012 Nov 16;13:634. doi: 10.1186/1471-2164-13-634.

5.

Prediction of protein domain boundaries from inverse covariances.

Sadowski MI.

Proteins. 2013 Feb;81(2):253-60. doi: 10.1002/prot.24181. Epub 2012 Oct 16.

6.

Hydrophobic forces and the length limit of foldable protein domains.

Lin MM, Zewail AH.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9851-6. doi: 10.1073/pnas.1207382109. Epub 2012 Jun 4.

7.
8.

Protein domain assignment from the recurrence of locally similar structures.

Tai CH, Sam V, Gibrat JF, Garnier J, Munson PJ, Lee B.

Proteins. 2011 Mar;79(3):853-66. doi: 10.1002/prot.22923. Epub 2010 Dec 22.

9.

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-GarcĂ­a A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27.

10.

StoneHinge: hinge prediction by network analysis of individual protein structures.

Keating KS, Flores SC, Gerstein MB, Kuhn LA.

Protein Sci. 2009 Feb;18(2):359-71. doi: 10.1002/pro.38.

11.

Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking.

Dobbins SE, Lesk VI, Sternberg MJ.

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10390-5. doi: 10.1073/pnas.0802496105. Epub 2008 Jul 18.

12.
13.

High performance workflow implementation for protein surface characterization using grid technology.

Merelli I, Morra G, D'Agostino D, Clematis A, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S19.

14.

Prediction of protein domain boundaries from sequence alone.

Galzitskaya OV, Melnik BS.

Protein Sci. 2003 Apr;12(4):696-701.

15.

Improving the performance of DomainParser for structural domain partition using neural network.

Guo JT, Xu D, Kim D, Xu Y.

Nucleic Acids Res. 2003 Feb 1;31(3):944-52.

16.

Evolutionary classification of homeodomains.

Gindilis V, Goltsman E, Verlinsky Y.

J Assist Reprod Genet. 1998 May;15(5):349-57.

17.

Domain assignment for protein structures using a consensus approach: characterization and analysis.

Jones S, Stewart M, Michie A, Swindells MB, Orengo C, Thornton JM.

Protein Sci. 1998 Feb;7(2):233-42.

18.

Touring protein fold space with Dali/FSSP.

Holm L, Sander C.

Nucleic Acids Res. 1998 Jan 1;26(1):316-9.

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