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Items: 1 to 20 of 22


The role of negative selection in protein evolution revealed through the energetics of the native state ensemble.

Hoffmann J, Wrabl JO, Hilser VJ.

Proteins. 2016 Apr;84(4):435-47. doi: 10.1002/prot.24989. Epub 2016 Feb 13.


Characteristics and prediction of RNA structure.

Li H, Zhu D, Zhang C, Han H, Crandall KA.

Biomed Res Int. 2014;2014:690340. doi: 10.1155/2014/690340. Epub 2014 Jul 6.


Dynamics of domain coverage of the protein sequence universe.

Rekapalli B, Wuichet K, Peterson GD, Zhulin IB.

BMC Genomics. 2012 Nov 16;13:634. doi: 10.1186/1471-2164-13-634.


Prediction of protein domain boundaries from inverse covariances.

Sadowski MI.

Proteins. 2013 Feb;81(2):253-60. doi: 10.1002/prot.24181. Epub 2012 Oct 16.


Hydrophobic forces and the length limit of foldable protein domains.

Lin MM, Zewail AH.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9851-6. doi: 10.1073/pnas.1207382109. Epub 2012 Jun 4.


Protein domain assignment from the recurrence of locally similar structures.

Tai CH, Sam V, Gibrat JF, Garnier J, Munson PJ, Lee B.

Proteins. 2011 Mar;79(3):853-66. doi: 10.1002/prot.22923. Epub 2010 Dec 22.


Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-GarcĂ­a A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27.


StoneHinge: hinge prediction by network analysis of individual protein structures.

Keating KS, Flores SC, Gerstein MB, Kuhn LA.

Protein Sci. 2009 Feb;18(2):359-71. doi: 10.1002/pro.38.


Insights into protein flexibility: The relationship between normal modes and conformational change upon protein-protein docking.

Dobbins SE, Lesk VI, Sternberg MJ.

Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10390-5. doi: 10.1073/pnas.0802496105. Epub 2008 Jul 18.


High performance workflow implementation for protein surface characterization using grid technology.

Merelli I, Morra G, D'Agostino D, Clematis A, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S19.


Prediction of protein domain boundaries from sequence alone.

Galzitskaya OV, Melnik BS.

Protein Sci. 2003 Apr;12(4):696-701.


Improving the performance of DomainParser for structural domain partition using neural network.

Guo JT, Xu D, Kim D, Xu Y.

Nucleic Acids Res. 2003 Feb 1;31(3):944-52.


Evolutionary classification of homeodomains.

Gindilis V, Goltsman E, Verlinsky Y.

J Assist Reprod Genet. 1998 May;15(5):349-57.


Domain assignment for protein structures using a consensus approach: characterization and analysis.

Jones S, Stewart M, Michie A, Swindells MB, Orengo C, Thornton JM.

Protein Sci. 1998 Feb;7(2):233-42.


Touring protein fold space with Dali/FSSP.

Holm L, Sander C.

Nucleic Acids Res. 1998 Jan 1;26(1):316-9.

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