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Structural basis for human PRDM9 action at recombination hot spots.

Patel A, Horton JR, Wilson GG, Zhang X, Cheng X.

Genes Dev. 2016 Feb 1;30(3):257-65. doi: 10.1101/gad.274928.115.


On the role of steric clashes in methylation control of restriction endonuclease activity.

Mierzejewska K, Bochtler M, Czapinska H.

Nucleic Acids Res. 2016 Jan 8;44(1):485-95. doi: 10.1093/nar/gkv1341. Epub 2015 Dec 3.


Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X.

Nucleic Acids Res. 2014 Jul;42(12):7947-59. doi: 10.1093/nar/gku497. Epub 2014 Jun 3.


Type II restriction endonucleases--a historical perspective and more.

Pingoud A, Wilson GG, Wende W.

Nucleic Acids Res. 2014 Jul;42(12):7489-527. doi: 10.1093/nar/gku447. Epub 2014 May 30. Review.


Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI.

Horton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X.

Sci Rep. 2014 Mar 7;4:4246. doi: 10.1038/srep04246.


Structural characterization of MepB from Staphylococcus aureus reveals homology to endonucleases.

Agah S, Poulos S, Banchs C, Faham S.

Protein Sci. 2014 May;23(5):594-602. doi: 10.1002/pro.2438. Epub 2014 Mar 11.


TALE-PvuII fusion proteins--novel tools for gene targeting.

Yanik M, Alzubi J, Lahaye T, Cathomen T, Pingoud A, Wende W.

PLoS One. 2013 Dec 5;8(12):e82539. doi: 10.1371/journal.pone.0082539. eCollection 2013.


Highlights of the DNA cutters: a short history of the restriction enzymes.

Loenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE.

Nucleic Acids Res. 2014 Jan;42(1):3-19. doi: 10.1093/nar/gkt990. Epub 2013 Oct 18.


Naturally-occurring, dually-functional fusions between restriction endonucleases and regulatory proteins.

Liang J, Blumenthal RM.

BMC Evol Biol. 2013 Oct 2;13:218. doi: 10.1186/1471-2148-13-218.


Creating highly specific nucleases by fusion of active restriction endonucleases and catalytically inactive homing endonucleases.

Fonfara I, Curth U, Pingoud A, Wende W.

Nucleic Acids Res. 2012 Jan;40(2):847-60. doi: 10.1093/nar/gkr788. Epub 2011 Sep 29.


Plasmid addiction systems: perspectives and applications in biotechnology.

Kroll J, Klinter S, Schneider C, Voss I, Steinbüchel A.

Microb Biotechnol. 2010 Nov;3(6):634-57. doi: 10.1111/j.1751-7915.2010.00170.x. Review.


DNA intercalation without flipping in the specific ThaI-DNA complex.

Firczuk M, Wojciechowski M, Czapinska H, Bochtler M.

Nucleic Acids Res. 2011 Jan;39(2):744-54. doi: 10.1093/nar/gkq834. Epub 2010 Sep 21.


BspRI restriction endonuclease: cloning, expression in Escherichia coli and sequential cleavage mechanism.

Raskó T, Dér A, Klement E, Slaska-Kiss K, Pósfai E, Medzihradszky KF, Marshak DR, Roberts RJ, Kiss A.

Nucleic Acids Res. 2010 Nov;38(20):7155-66. doi: 10.1093/nar/gkq567. Epub 2010 Jun 29.


Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity.

Morgan RD, Luyten YA.

Nucleic Acids Res. 2009 Aug;37(15):5222-33. doi: 10.1093/nar/gkp535. Epub 2009 Jun 30.


Crystal structure of the beta beta alpha-Me type II restriction endonuclease Hpy99I with target DNA.

Sokolowska M, Czapinska H, Bochtler M.

Nucleic Acids Res. 2009 Jun;37(11):3799-810. doi: 10.1093/nar/gkp228. Epub 2009 Apr 20.


Purification, crystallization, X-ray diffraction analysis and phasing of an engineered single-chain PvuII restriction endonuclease.

Meramveliotaki C, Kotsifaki D, Androulaki M, Hountas A, Eliopoulos E, Kokkinidis M.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Oct 1;63(Pt 10):836-8. Epub 2007 Sep 19.


Wiggle-predicting functionally flexible regions from primary sequence.

Gu J, Gribskov M, Bourne PE.

PLoS Comput Biol. 2006 Jul 14;2(7):e90. Epub 2006 Jun 5.


Developing a programmed restriction endonuclease for highly specific DNA cleavage.

Eisenschmidt K, Lanio T, Simoncsits A, Jeltsch A, Pingoud V, Wende W, Pingoud A.

Nucleic Acids Res. 2005 Dec 14;33(22):7039-47. Print 2005.


A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.

Vanamee ES, Viadiu H, Kucera R, Dorner L, Picone S, Schildkraut I, Aggarwal AK.

EMBO J. 2005 Dec 7;24(23):4198-208. Epub 2005 Nov 24.

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