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Results: 1 to 20 of 95

Cited In for PubMed (Select 7563092)


Targeting HIV Transcription: The Quest for a Functional Cure.

Mousseau G, Mediouni S, Valente ST.

Curr Top Microbiol Immunol. 2015;389:121-45. doi: 10.1007/82_2015_435.


Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplore.

Dickson A, Mustoe AM, Salmon L, Brooks CL 3rd.

Nucleic Acids Res. 2014 Oct 29;42(19):12126-37. doi: 10.1093/nar/gku799. Epub 2014 Oct 7.


AFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter.

Schulze-Gahmen U, Lu H, Zhou Q, Alber T.

Elife. 2014 Apr 24;3:e02375. doi: 10.7554/eLife.02375.


Small-angle X-ray scattering-derived structure of the HIV-1 5' UTR reveals 3D tRNA mimicry.

Jones CP, Cantara WA, Olson ED, Musier-Forsyth K.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3395-400. doi: 10.1073/pnas.1319658111. Epub 2014 Feb 18.


Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges.

Mustoe AM, Al-Hashimi HM, Brooks CL 3rd.

J Phys Chem B. 2014 Mar 13;118(10):2615-27. doi: 10.1021/jp411478x. Epub 2014 Mar 3.


Elucidating molecular motion through structural and dynamic filters of energy-minimized conformer ensembles.

Emani PS, Bardaro MF Jr, Huang W, Aragon S, Varani G, Drobny GP.

J Phys Chem B. 2014 Feb 20;118(7):1726-42. doi: 10.1021/jp409386t. Epub 2014 Feb 11.


Distinct conformational transition patterns of noncoding 7SK snRNA and HIV TAR RNAs upon Tat binding.

Lu J, Wong V, Zhang Y, Tran T, Zhao L, Xia A, Xia T, Qi X.

Biochemistry. 2014 Feb 4;53(4):675-81. doi: 10.1021/bi401131z. Epub 2014 Jan 23.


NMR studies of nucleic acid dynamics.

Al-Hashimi HM.

J Magn Reson. 2013 Dec;237:191-204. doi: 10.1016/j.jmr.2013.08.014. Epub 2013 Sep 3.


Influence of dimethylsulfoxide on RNA structure and ligand binding.

Lee J, Vogt CE, McBrairty M, Al-Hashimi HM.

Anal Chem. 2013 Oct 15;85(20):9692-8. doi: 10.1021/ac402038t. Epub 2013 Sep 25.


Binding of a structured D-RNA molecule by an L-RNA aptamer.

Sczepanski JT, Joyce GF.

J Am Chem Soc. 2013 Sep 11;135(36):13290-3. doi: 10.1021/ja406634g. Epub 2013 Aug 28.


In-gel probing of individual RNA conformers within a mixed population reveals a dimerization structural switch in the HIV-1 leader.

Kenyon JC, Prestwood LJ, Le Grice SF, Lever AM.

Nucleic Acids Res. 2013 Oct;41(18):e174. doi: 10.1093/nar/gkt690. Epub 2013 Aug 8.


Three-dimensional RNA structure of the major HIV-1 packaging signal region.

Stephenson JD, Li H, Kenyon JC, Symmons M, Klenerman D, Lever AM.

Structure. 2013 Jun 4;21(6):951-62. doi: 10.1016/j.str.2013.04.008. Epub 2013 May 16.


Thermodynamic studies of a series of homologous HIV-1 TAR RNA ligands reveal that loose binders are stronger Tat competitors than tight ones.

Pascale L, Azoulay S, Di Giorgio A, Zenacker L, Gaysinski M, Clayette P, Patino N.

Nucleic Acids Res. 2013 Jun;41(11):5851-63. doi: 10.1093/nar/gkt237. Epub 2013 Apr 19.


On the role of four small hairpins in the HIV-1 RNA genome.

Knoepfel SA, Berkhout B.

RNA Biol. 2013 Apr;10(4):540-52. doi: 10.4161/rna.24133. Epub 2013 Mar 27.


Enhanced sampling and overfitting analyses in structural refinement of nucleic acids into electron microscopy maps.

Vashisth H, Skiniotis G, Brooks CL 3rd.

J Phys Chem B. 2013 Apr 11;117(14):3738-46. doi: 10.1021/jp3126297. Epub 2013 Apr 1.


Wine polyphenols: potential agents in neuroprotection.

Basli A, Soulet S, Chaher N, Mérillon JM, Chibane M, Monti JP, Richard T.

Oxid Med Cell Longev. 2012;2012:805762. doi: 10.1155/2012/805762. Epub 2012 Jul 5. Review.


Intrinsic nucleic acid dynamics modulates HIV-1 nucleocapsid protein binding to its targets.

Bazzi A, Zargarian L, Chaminade F, De Rocquigny H, René B, Mély Y, Fossé P, Mauffret O.

PLoS One. 2012;7(6):e38905. doi: 10.1371/journal.pone.0038905. Epub 2012 Jun 20.


Biophysical characterization of the strong stabilization of the RNA triplex poly(U)•poly(A)*poly(U) by 9-O-(ω-amino) alkyl ether berberine analogs.

Bhowmik D, Das S, Hossain M, Haq L, Suresh Kumar G.

PLoS One. 2012;7(5):e37939. doi: 10.1371/journal.pone.0037939. Epub 2012 May 29.


Transcriptional and posttranscriptional regulation of HIV-1 gene expression.

Karn J, Stoltzfus CM.

Cold Spring Harb Perspect Med. 2012 Feb;2(2):a006916. doi: 10.1101/cshperspect.a006916. Review.


Click dimers to target HIV TAR RNA conformation.

Kumar S, Kellish P, Robinson WE Jr, Wang D, Appella DH, Arya DP.

Biochemistry. 2012 Mar 20;51(11):2331-47. doi: 10.1021/bi201657k. Epub 2012 Mar 9. Erratum in: Biochemistry. 2013 Oct 8;52(40):7159.

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