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Results: 1 to 20 of 178

Cited In for PubMed (Select 7516580)

1.

New structural snapshots provide molecular insights into the mechanism of high fidelity DNA synthesis.

Freudenthal BD, Beard WA, Wilson SH.

DNA Repair (Amst). 2015 Apr 30. pii: S1568-7864(15)00099-3. doi: 10.1016/j.dnarep.2015.04.007. [Epub ahead of print]

PMID:
26002198
2.

Structures to complement the archaeo-eukaryotic primases catalytic cycle description: What's next?

Boudet J, Devillier JC, Allain FH, Lipps G.

Comput Struct Biotechnol J. 2015 May 2;13:339-51. doi: 10.1016/j.csbj.2015.04.006. eCollection 2015. Review.

3.

Viewing Human DNA Polymerase β Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.

Vyas R, Reed AJ, Tokarsky EJ, Suo Z.

J Am Chem Soc. 2015 Apr 22;137(15):5225-30. doi: 10.1021/jacs.5b02109. Epub 2015 Apr 9.

PMID:
25825995
4.

Ribonucleotides in bacterial DNA.

Schroeder JW, Randall JR, Matthews LA, Simmons LA.

Crit Rev Biochem Mol Biol. 2014 Nov 12:1-13. [Epub ahead of print]

PMID:
25387798
5.

Real-time surface plasmon resonance study of biomolecular interactions between polymerase and bulky mutagenic DNA lesions.

Xu L, Vaidyanathan VG, Cho BP.

Chem Res Toxicol. 2014 Oct 20;27(10):1796-807. doi: 10.1021/tx500252z. Epub 2014 Sep 19.

PMID:
25195494
6.

Recognition and repair of chemically heterogeneous structures at DNA ends.

Andres SN, Schellenberg MJ, Wallace BD, Tumbale P, Williams RS.

Environ Mol Mutagen. 2015 Jan;56(1):1-21. doi: 10.1002/em.21892. Epub 2014 Aug 11. Review.

PMID:
25111769
7.

Ultrafast water dynamics at the interface of the polymerase-DNA binding complex.

Yang Y, Qin Y, Ding Q, Bakhtina M, Wang L, Tsai MD, Zhong D.

Biochemistry. 2014 Aug 26;53(33):5405-13. doi: 10.1021/bi500810a. Epub 2014 Aug 15.

PMID:
25105470
8.

Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase.

Gaur V, Vyas R, Fowler JD, Efthimiopoulos G, Feng JY, Suo Z.

Nucleic Acids Res. 2014 Sep;42(15):9984-95. doi: 10.1093/nar/gku709. Epub 2014 Aug 7.

9.

Fluorescence resonance energy transfer studies of DNA polymerase β: the critical role of fingers domain movements and a novel non-covalent step during nucleotide selection.

Towle-Weicksel JB, Dalal S, Sohl CD, Doublié S, Anderson KS, Sweasy JB.

J Biol Chem. 2014 Jun 6;289(23):16541-50. doi: 10.1074/jbc.M114.561878. Epub 2014 Apr 24.

10.

Structure and mechanism of DNA polymerase β.

Beard WA, Wilson SH.

Biochemistry. 2014 May 6;53(17):2768-80. doi: 10.1021/bi500139h. Epub 2014 Apr 23.

11.

Recent insight into the kinetic mechanisms and conformational dynamics of Y-Family DNA polymerases.

Maxwell BA, Suo Z.

Biochemistry. 2014 May 6;53(17):2804-14. doi: 10.1021/bi5000405. Epub 2014 Apr 23. Review.

12.

Transition state in DNA polymerase β catalysis: rate-limiting chemistry altered by base-pair configuration.

Oertell K, Chamberlain BT, Wu Y, Ferri E, Kashemirov BA, Beard WA, Wilson SH, McKenna CE, Goodman MF.

Biochemistry. 2014 Mar 25;53(11):1842-8. doi: 10.1021/bi500101z. Epub 2014 Mar 12.

13.

Structural basis for promutagenicity of 8-halogenated guanine.

Koag MC, Min K, Lee S.

J Biol Chem. 2014 Feb 28;289(9):6289-98. doi: 10.1074/jbc.M113.537803. Epub 2014 Jan 14.

14.

Role of the LEXE motif of protein-primed DNA polymerases in the interaction with the incoming nucleotide.

Santos E, Lázaro JM, Pérez-Arnaiz P, Salas M, de Vega M.

J Biol Chem. 2014 Jan 31;289(5):2888-98. doi: 10.1074/jbc.M113.530980. Epub 2013 Dec 9.

15.

The active site of TthPolX is adapted to prevent 8-oxo-dGTP misincorporation.

Garrido P, Mejia E, Garcia-Diaz M, Blanco L, Picher AJ.

Nucleic Acids Res. 2014 Jan;42(1):534-43. doi: 10.1093/nar/gkt870. Epub 2013 Sep 30.

16.

Inhibition of HIV-1 reverse transcriptase-catalyzed synthesis by intercalated DNA Benzo[a]Pyrene 7,8-Dihydrodiol-9,10-Epoxide adducts.

Chary P, Beard WA, Wilson SH, Lloyd RS.

PLoS One. 2013 Sep 19;8(9):e72131. doi: 10.1371/journal.pone.0072131. eCollection 2013.

17.

A specific N-terminal extension of the 8 kDa domain is required for DNA end-bridging by human Polμ and Polλ.

Martin MJ, Garcia-Ortiz MV, Gomez-Bedoya A, Esteban V, Guerra S, Blanco L.

Nucleic Acids Res. 2013 Oct;41(19):9105-16. doi: 10.1093/nar/gkt681. Epub 2013 Aug 8.

18.

Automatic workflow for the classification of local DNA conformations.

Čech P, Kukal J, Černý J, Schneider B, Svozil D.

BMC Bioinformatics. 2013 Jun 25;14:205. doi: 10.1186/1471-2105-14-205.

19.

Structural changes in the hydrophobic hinge region adversely affect the activity and fidelity of the I260Q mutator DNA polymerase β.

Gridley CL, Rangarajan S, Firbank S, Dalal S, Sweasy JB, Jaeger J.

Biochemistry. 2013 Jun 25;52(25):4422-32. doi: 10.1021/bi301368f. Epub 2013 Jun 12.

20.

Perspective: pre-chemistry conformational changes in DNA polymerase mechanisms.

Schlick T, Arora K, Beard WA, Wilson SH.

Theor Chem Acc. 2012 Nov 1;131:1287. Epub 2012 Nov 23.

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