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Results: 1 to 20 of 93

Cited In for PubMed (Select 7508076)

1.

Hierarchical ensemble methods for protein function prediction.

Valentini G.

ISRN Bioinform. 2014 May 4;2014:901419. doi: 10.1155/2014/901419. eCollection 2014. Review.

2.

Escherichia [corrected] coli ribose binding protein based bioreporters revisited.

Reimer A, Yagur-Kroll S, Belkin S, Roy S, van der Meer JR.

Sci Rep. 2014 Jul 9;4:5626. doi: 10.1038/srep05626. Erratum in: Sci Rep. 2014;4:7445.

3.

Nutritional and metabolic requirements for the infection of HeLa cells by Salmonella enterica serovar Typhimurium.

Bowden SD, Hopper-Chidlaw AC, Rice CJ, Ramachandran VK, Kelly DJ, Thompson A.

PLoS One. 2014 May 5;9(5):e96266. doi: 10.1371/journal.pone.0096266. eCollection 2014.

4.

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism.

Pettit LJ, Browne HP, Yu L, Smits WK, Fagan RP, Barquist L, Martin MJ, Goulding D, Duncan SH, Flint HJ, Dougan G, Choudhary JS, Lawley TD.

BMC Genomics. 2014 Feb 25;15:160. doi: 10.1186/1471-2164-15-160.

5.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.

Darrasse A, Carrère S, Barbe V, Boureau T, Arrieta-Ortiz ML, Bonneau S, Briand M, Brin C, Cociancich S, Durand K, Fouteau S, Gagnevin L, Guérin F, Guy E, Indiana A, Koebnik R, Lauber E, Munoz A, Noël LD, Pieretti I, Poussier S, Pruvost O, Robène-Soustrade I, Rott P, Royer M, Serres-Giardi L, Szurek B, van Sluys MA, Verdier V, Vernière C, Arlat M, Manceau C, Jacques MA.

BMC Genomics. 2013 Nov 6;14:761. doi: 10.1186/1471-2164-14-761.

6.

The cold-induced two-component system CBO0366/CBO0365 regulates metabolic pathways with novel roles in group I Clostridium botulinum ATCC 3502 cold tolerance.

Dahlsten E, Zhang Z, Somervuo P, Minton NP, Lindström M, Korkeala H.

Appl Environ Microbiol. 2014 Jan;80(1):306-19. doi: 10.1128/AEM.03173-13. Epub 2013 Oct 25.

7.

Biofilm-grown Burkholderia cepacia complex cells survive antibiotic treatment by avoiding production of reactive oxygen species.

Van Acker H, Sass A, Bazzini S, De Roy K, Udine C, Messiaen T, Riccardi G, Boon N, Nelis HJ, Mahenthiralingam E, Coenye T.

PLoS One. 2013;8(3):e58943. doi: 10.1371/journal.pone.0058943. Epub 2013 Mar 13.

8.

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus.

Castillo-Ramírez S, Corander J, Marttinen P, Aldeljawi M, Hanage WP, Westh H, Boye K, Gulay Z, Bentley SD, Parkhill J, Holden MT, Feil EJ.

Genome Biol. 2012 Dec 27;13(12):R126. doi: 10.1186/gb-2012-13-12-r126.

9.

Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.

Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M, Webster NJ, Vinetz JM, Matthias MA.

PLoS Negl Trop Dis. 2012;6(10):e1853. doi: 10.1371/journal.pntd.0001853. Epub 2012 Oct 25.

10.

Teaching the design principles of metabolism.

Rabinowitz JD, Vastag L.

Nat Chem Biol. 2012 May 17;8(6):497-501. doi: 10.1038/nchembio.969. No abstract available.

11.

SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis.

Mäder U, Schmeisky AG, Flórez LA, Stülke J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1278-87. doi: 10.1093/nar/gkr923. Epub 2011 Nov 16.

12.

Relaxed natural selection alone does not permit transposable element expansion within 4,000 generations in Escherichia coli.

Plague GR, Dougherty KM, Boodram KS, Boustani SE, Cao H, Manning SR, McNally CC.

Genetica. 2011 Jul;139(7):895-902. doi: 10.1007/s10709-011-9593-x. Epub 2011 Jul 13.

13.

B2G-FAR, a species-centered GO annotation repository.

Götz S, Arnold R, Sebastián-León P, Martín-Rodríguez S, Tischler P, Jehl MA, Dopazo J, Rattei T, Conesa A.

Bioinformatics. 2011 Apr 1;27(7):919-24. doi: 10.1093/bioinformatics/btr059. Epub 2011 Feb 18.

14.

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.

Tanenbaum DM, Goll J, Murphy S, Kumar P, Zafar N, Thiagarajan M, Madupu R, Davidsen T, Kagan L, Kravitz S, Rusch DB, Yooseph S.

Stand Genomic Sci. 2010 Mar 30;2(2):229-37. doi: 10.4056/sigs.651139.

15.

Complete sequencing and pan-genomic analysis of Lactobacillus delbrueckii subsp. bulgaricus reveal its genetic basis for industrial yogurt production.

Hao P, Zheng H, Yu Y, Ding G, Gu W, Chen S, Yu Z, Ren S, Oda M, Konno T, Wang S, Li X, Ji ZS, Zhao G.

PLoS One. 2011 Jan 17;6(1):e15964. doi: 10.1371/journal.pone.0015964.

16.

Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the σ54 regulon.

da Silva Neto JF, Koide T, Gomes SL, Marques MV.

BMC Microbiol. 2010 Aug 28;10:231. doi: 10.1186/1471-2180-10-231.

17.

Tracing phylogenomic events leading to diversity of Haemophilus influenzae and the emergence of Brazilian Purpuric Fever (BPF)-associated clones.

Papazisi L, Ratnayake S, Remortel BG, Bock GR, Liang W, Saeed AI, Liu J, Fleischmann RD, Kilian M, Peterson SN.

Genomics. 2010 Nov;96(5):290-302. doi: 10.1016/j.ygeno.2010.07.005. Epub 2010 Jul 30.

18.

The comprehensive microbial resource.

Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D340-5. doi: 10.1093/nar/gkp912. Epub 2009 Nov 5.

19.

Glucose and glycolysis are required for the successful infection of macrophages and mice by Salmonella enterica serovar typhimurium.

Bowden SD, Rowley G, Hinton JC, Thompson A.

Infect Immun. 2009 Jul;77(7):3117-26. doi: 10.1128/IAI.00093-09. Epub 2009 Apr 20.

20.

Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14.

Ding F, Tang P, Hsu MH, Cui P, Hu S, Yu J, Chiu CH.

BMC Genomics. 2009 Apr 13;10:158. doi: 10.1186/1471-2164-10-158.

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