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Cited In for PubMed (Select 7265238)


Prediction of structural features and application to outer membrane protein identification.

Yan R, Wang X, Huang L, Yan F, Xue X, Cai W.

Sci Rep. 2015 Jun 24;5:11586. doi: 10.1038/srep11586.


Towards computational improvement of DNA database indexing and short DNA query searching.

Stojanov D, Koceski S, Mileva A, Koceska N, Bande CM.

Biotechnol Biotechnol Equip. 2014 Sep 3;28(5):958-967. Epub 2014 Oct 31.


Split-alignment of genomes finds orthologies more accurately.

Frith MC, Kawaguchi R.

Genome Biol. 2015 May 21;16:106. doi: 10.1186/s13059-015-0670-9.


Roles of solvent accessibility and gene expression in modeling protein sequence evolution.

Wang K, Yu S, Ji X, Lakner C, Griffing A, Thorne JL.

Evol Bioinform Online. 2015 Apr 29;11:85-96. doi: 10.4137/EBO.S22911. eCollection 2015.


A Systolic Array-Based FPGA Parallel Architecture for the BLAST Algorithm.

Guo X, Wang H, Devabhaktuni V.

ISRN Bioinform. 2012 Sep 4;2012:195658. doi: 10.5402/2012/195658. eCollection 2012.


MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

Luo R, Cheung J, Wu E, Wang H, Chan SH, Law WC, He G, Yu C, Liu CM, Zhou D, Li Y, Li R, Wang J, Zhu X, Peng S, Lam TW.

BMC Bioinformatics. 2015;16 Suppl 7:S10. doi: 10.1186/1471-2105-16-S7-S10. Epub 2015 Apr 23.


Modern Computational Techniques for the HMMER Sequence Analysis.

Meng X, Ji Y.

ISRN Bioinform. 2013 Sep 3;2013:252183. doi: 10.1155/2013/252183. eCollection 2013. Review.


Francisella tularensis Subtype A.II Genomic Plasticity in Comparison with Subtype A.I.

Larson MA, Nalbantoglu U, Sayood K, Zentz EB, Bartling AM, Francesconi SC, Fey PD, Dempsey MP, Hinrichs SH.

PLoS One. 2015 Apr 28;10(4):e0124906. doi: 10.1371/journal.pone.0124906. eCollection 2014.


Buried ionizable networks are an ancient hallmark of G protein-coupled receptor activation.

Isom DG, Dohlman HG.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5702-7. doi: 10.1073/pnas.1417888112. Epub 2015 Apr 20.


Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer.

Okumura K, Kato M, Kirikae T, Kayano M, Miyoshi-Akiyama T.

BMC Genomics. 2015 Mar 20;16:218. doi: 10.1186/s12864-015-1368-9.


Structure of a TLR4-interacting SPA4 peptide.

Awasthi S, Anbanandam A, Rodgers KK.

RSC Adv. 2015;5(35):27431-27438.


Reconstructing genome-scale metabolic models with merlin.

Dias O, Rocha M, Ferreira EC, Rocha I.

Nucleic Acids Res. 2015 Apr 30;43(8):3899-910. doi: 10.1093/nar/gkv294. Epub 2015 Apr 6.


The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen.

Strope PK, Skelly DA, Kozmin SG, Mahadevan G, Stone EA, Magwene PM, Dietrich FS, McCusker JH.

Genome Res. 2015 May;25(5):762-74. doi: 10.1101/gr.185538.114. Epub 2015 Apr 3.


Conservation of pro-longevity genes among mammals.

Lindborg CM, Propert KJ, Pignolo RJ.

Mech Ageing Dev. 2015 Mar;146-148:23-7. doi: 10.1016/j.mad.2015.03.004. Epub 2015 Mar 21.


Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia.

Blachly JS, Ruppert AS, Zhao W, Long S, Flynn J, Flinn I, Jones J, Maddocks K, Andritsos L, Ghia EM, Rassenti LZ, Kipps TJ, de la Chapelle A, Byrd JC.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4322-7. doi: 10.1073/pnas.1503587112. Epub 2015 Mar 18.


Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space.

Wilton R, Budavari T, Langmead B, Wheelan SJ, Salzberg SL, Szalay AS.

PeerJ. 2015 Mar 3;3:e808. doi: 10.7717/peerj.808. eCollection 2015.


Determining similarity of scientific entities in annotation datasets.

Palma G, Vidal ME, Haag E, Raschid L, Thor A.

Database (Oxford). 2015 Feb 27;2015. pii: bau123. doi: 10.1093/database/bau123. Print 2015.


Automated Tools for Clinical Research Data Quality Control using NCI Common Data Elements.

Hudson CL, Topaloglu U, Bian J, Hogan W, Kieber-Emmons T.

AMIA Jt Summits Transl Sci Proc. 2014 Apr 7;2014:60-9. eCollection 2014.


Predicting target-ligand interactions using protein ligand-binding site and ligand substructures.

Wang C, Liu J, Luo F, Deng Z, Hu QN.

BMC Syst Biol. 2015;9 Suppl 1:S2. doi: 10.1186/1752-0509-9-S1-S2. Epub 2015 Jan 21.


Single-taxon field measurements of bacterial gene regulation controlling DMSP fate.

Varaljay VA, Robidart J, Preston CM, Gifford SM, Durham BP, Burns AS, Ryan JP, Marin Iii R, Kiene RP, Zehr JP, Scholin CA, Ann Moran M.

ISME J. 2015 Jul;9(7):1677-86. doi: 10.1038/ismej.2015.23. Epub 2015 Feb 20.

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