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Results: 1 to 20 of 121

1.

Chromatin Accessibility Mapping Identifies Mediators of Basal Transcription and Retinoid-Induced Repression of OTX2 in Medulloblastoma.

Wortham M, Guo C, Zhang M, Song L, Lee BK, Iyer VR, Furey TS, Crawford GE, Yan H, He Y.

PLoS One. 2014 Sep 8;9(9):e107156. doi: 10.1371/journal.pone.0107156. eCollection 2014.

PMID:
25198066
[PubMed - in process]
Free PMC Article
2.

Tissue-specific RNA expression marks distant-acting developmental enhancers.

Wu H, Nord AS, Akiyama JA, Shoukry M, Afzal V, Rubin EM, Pennacchio LA, Visel A.

PLoS Genet. 2014 Sep 4;10(9):e1004610. doi: 10.1371/journal.pgen.1004610. eCollection 2014 Sep.

PMID:
25188404
[PubMed - in process]
Free PMC Article
3.

Data integration in the era of omics: current and future challenges.

Gomez-Cabrero D, Abugessaisa I, Maier D, Teschendorff A, Merkenschlager M, Gisel A, Ballestar E, Bongcam-Rudloff E, Conesa A, Tegnér J.

BMC Syst Biol. 2014;8 Suppl 2:I1. doi: 10.1186/1752-0509-8-S2-I1. Epub 2014 Mar 13.

PMID:
25032990
[PubMed - in process]
Free PMC Article
4.

Transcriptional landscape of repetitive elements in normal and cancer human cells.

Criscione SW, Zhang Y, Thompson W, Sedivy JM, Neretti N.

BMC Genomics. 2014 Jul 11;15:583. doi: 10.1186/1471-2164-15-583.

PMID:
25012247
[PubMed - in process]
Free PMC Article
5.

Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions.

Beshnova DA, Cherstvy AG, Vainshtein Y, Teif VB.

PLoS Comput Biol. 2014 Jul 3;10(7):e1003698. doi: 10.1371/journal.pcbi.1003698. eCollection 2014 Jul.

PMID:
24992723
[PubMed - in process]
Free PMC Article
6.

OccuPeak: ChIP-Seq peak calling based on internal background modelling.

de Boer BA, van Duijvenboden K, van den Boogaard M, Christoffels VM, Barnett P, Ruijter JM.

PLoS One. 2014 Jun 17;9(6):e99844. doi: 10.1371/journal.pone.0099844. eCollection 2014.

PMID:
24936875
[PubMed - in process]
Free PMC Article
7.

Epigenetic-based therapies for Friedreich ataxia.

Sandi C, Sandi M, Anjomani Virmouni S, Al-Mahdawi S, Pook MA.

Front Genet. 2014 Jun 3;5:165. doi: 10.3389/fgene.2014.00165. eCollection 2014. Review.

PMID:
24917884
[PubMed]
Free PMC Article
8.

Novel principles of gamma-retroviral insertional transcription activation in murine leukemia virus-induced end-stage tumors.

Sokol M, Wabl M, Ruiz IR, Pedersen FS.

Retrovirology. 2014 May 19;11:36. doi: 10.1186/1742-4690-11-36.

PMID:
24886479
[PubMed - in process]
Free PMC Article
9.

Identification of alternative topological domains in chromatin.

Filippova D, Patro R, Duggal G, Kingsford C.

Algorithms Mol Biol. 2014 May 3;9:14. doi: 10.1186/1748-7188-9-14. eCollection 2014.

PMID:
24868242
[PubMed]
Free PMC Article
10.

Chromatin as dynamic 10-nm fibers.

Maeshima K, Imai R, Tamura S, Nozaki T.

Chromosoma. 2014 Jun;123(3):225-37. doi: 10.1007/s00412-014-0460-2. Epub 2014 Apr 16.

PMID:
24737122
[PubMed - in process]
Free PMC Article
11.

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases.

Shen L, Shao N, Liu X, Nestler E.

BMC Genomics. 2014 Apr 15;15:284. doi: 10.1186/1471-2164-15-284.

PMID:
24735413
[PubMed - in process]
Free PMC Article
12.

Chromatin landscapes of retroviral and transposon integration profiles.

de Jong J, Akhtar W, Badhai J, Rust AG, Rad R, Hilkens J, Berns A, van Lohuizen M, Wessels LF, de Ridder J.

PLoS Genet. 2014 Apr 10;10(4):e1004250. doi: 10.1371/journal.pgen.1004250. eCollection 2014 Apr.

PMID:
24721906
[PubMed - in process]
Free PMC Article
13.

Genome-wide analysis of the chromatin composition of histone H2A and H3 variants in mouse embryonic stem cells.

Yukawa M, Akiyama T, Franke V, Mise N, Isagawa T, Suzuki Y, Suzuki MG, Vlahovicek K, Abe K, Aburatani H, Aoki F.

PLoS One. 2014 Mar 21;9(3):e92689. doi: 10.1371/journal.pone.0092689. eCollection 2014.

PMID:
24658136
[PubMed - in process]
Free PMC Article
14.

Comparison of sequence variants in transcriptomic control regions across 17 mouse genomes.

Nguyen C, Baten A, Morahan G.

Database (Oxford). 2014 Mar 18;2014:bau020. doi: 10.1093/database/bau020. Print 2014.

PMID:
24647628
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolutionary conservation of the eumetazoan gene regulatory landscape.

Schwaiger M, Schönauer A, Rendeiro AF, Pribitzer C, Schauer A, Gilles AF, Schinko JB, Renfer E, Fredman D, Technau U.

Genome Res. 2014 Apr;24(4):639-50. doi: 10.1101/gr.162529.113. Epub 2014 Mar 18.

PMID:
24642862
[PubMed - in process]
Free PMC Article
16.

A common genetic variant within SCN10A modulates cardiac SCN5A expression.

van den Boogaard M, Smemo S, Burnicka-Turek O, Arnolds DE, van de Werken HJ, Klous P, McKean D, Muehlschlegel JD, Moosmann J, Toka O, Yang XH, Koopmann TT, Adriaens ME, Bezzina CR, de Laat W, Seidman C, Seidman JG, Christoffels VM, Nobrega MA, Barnett P, Moskowitz IP.

J Clin Invest. 2014 Apr 1;124(4):1844-52. doi: 10.1172/JCI73140. Epub 2014 Mar 18.

PMID:
24642470
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Mechanisms and proteins involved in long-distance interactions.

Maksimenko O, Georgiev P.

Front Genet. 2014 Feb 18;5:28. doi: 10.3389/fgene.2014.00028. eCollection 2014. Review.

PMID:
24600469
[PubMed]
Free PMC Article
18.

A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.

Tran NT, Huang CH.

Biol Direct. 2014 Feb 20;9:4. doi: 10.1186/1745-6150-9-4. Review.

PMID:
24555784
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq.

Tran NT, Huang CH.

Gene Regul Syst Bio. 2014 Jan 20;8:33-43. doi: 10.4137/GRSB.S13612. eCollection 2014.

PMID:
24526835
[PubMed]
Free PMC Article
20.

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.

Balwierz PJ, Pachkov M, Arnold P, Gruber AJ, Zavolan M, van Nimwegen E.

Genome Res. 2014 May;24(5):869-84. doi: 10.1101/gr.169508.113. Epub 2014 Feb 10.

PMID:
24515121
[PubMed - in process]
Free PMC Article

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