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Items: 1 to 20 of 176

1.

Exploring Genetic Diversity in Plants Using High-Throughput Sequencing Techniques.

Onda Y, Mochida K.

Curr Genomics. 2016 Aug;17(4):358-67. doi: 10.2174/1389202917666160331202742.

PMID:
27499684
2.

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms.

Zapata L, Ding J, Willing EM, Hartwig B, Bezdan D, Jiao WB, Patel V, Velikkakam James G, Koornneef M, Ossowski S, Schneeberger K.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4052-60. doi: 10.1073/pnas.1607532113. Epub 2016 Jun 27.

3.

Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens.

Deschamps S, Mudge J, Cameron C, Ramaraj T, Anand A, Fengler K, Hayes K, Llaca V, Jones TJ, May G.

Sci Rep. 2016 Jun 28;6:28625. doi: 10.1038/srep28625.

4.

Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing.

Vembar SS, Seetin M, Lambert C, Nattestad M, Schatz MC, Baybayan P, Scherf A, Smith ML.

DNA Res. 2016 Aug;23(4):339-51. doi: 10.1093/dnares/dsw022. Epub 2016 Jun 26.

5.

Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.

Ye C, Ma ZS.

PeerJ. 2016 Jun 8;4:e2016. doi: 10.7717/peerj.2016. eCollection 2016.

6.

Genome assembly from synthetic long read clouds.

Kuleshov V, Snyder MP, Batzoglou S.

Bioinformatics. 2016 Jun 15;32(12):i216-i224. doi: 10.1093/bioinformatics/btw267.

7.

Quality Assessment of Domesticated Animal Genome Assemblies.

Seemann SE, Anthon C, Palasca O, Gorodkin J.

Bioinform Biol Insights. 2016 Jun 6;9(Suppl 4):49-58. doi: 10.4137/BBI.S29333. eCollection 2015.

8.

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.

Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Wang R, Zhang Y, Zhou T, Zeng Q, Fu Q, Gao S, Li N, Koren S, Jiang Y, Zimin A, Xu P, Phillippy AM, Geng X, Song L, Sun F, Li C, Wang X, Chen A, Jin Y, Yuan Z, Yang Y, Tan S, Peatman E, Lu J, Qin Z, Dunham R, Li Z, Sonstegard T, Feng J, Danzmann RG, Schroeder S, Scheffler B, Duke MV, Ballard L, Kucuktas H, Kaltenboeck L, Liu H, Armbruster J, Xie Y, Kirby ML, Tian Y, Flanagan ME, Mu W, Waldbieser GC.

Nat Commun. 2016 Jun 2;7:11757. doi: 10.1038/ncomms11757.

9.

Intricacies of assessing the human microbiome in epidemiologic studies.

Robinson CK, Brotman RM, Ravel J.

Ann Epidemiol. 2016 May;26(5):311-21. doi: 10.1016/j.annepidem.2016.04.005. Epub 2016 Apr 12. Review.

PMID:
27180112
10.
11.

An Improved Genome Assembly of Azadirachta indica A. Juss.

Krishnan NM, Jain P, Gupta S, Hariharan AK, Panda B.

G3 (Bethesda). 2016 Jul 7;6(7):1835-40. doi: 10.1534/g3.116.030056.

12.

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees.

Gao S, Bertrand D, Chia BK, Nagarajan N.

Genome Biol. 2016 May 11;17:102. doi: 10.1186/s13059-016-0951-y.

13.

Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data.

Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VG, McHardy AC, Nederbragt AJ, Pope PB.

Sci Rep. 2016 May 9;6:25373. doi: 10.1038/srep25373.

14.

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.

Li H.

Bioinformatics. 2016 Jul 15;32(14):2103-10. doi: 10.1093/bioinformatics/btw152. Epub 2016 Mar 19.

PMID:
27153593
15.

Jabba: hybrid error correction for long sequencing reads.

Miclotte G, Heydari M, Demeester P, Rombauts S, Van de Peer Y, Audenaert P, Fostier J.

Algorithms Mol Biol. 2016 May 3;11:10. doi: 10.1186/s13015-016-0075-7. eCollection 2016.

16.

Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine.

Xiao W, Wu L, Yavas G, Simonyan V, Ning B, Hong H.

Pharmaceutics. 2016 Apr 22;8(2). pii: E15. doi: 10.3390/pharmaceutics8020015. Review.

17.

Companion: a web server for annotation and analysis of parasite genomes.

Steinbiss S, Silva-Franco F, Brunk B, Foth B, Hertz-Fowler C, Berriman M, Otto TD.

Nucleic Acids Res. 2016 Jul 8;44(W1):W29-34. doi: 10.1093/nar/gkw292. Epub 2016 Apr 21.

18.

Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products.

Gomez-Escribano JP, Alt S, Bibb MJ.

Mar Drugs. 2016 Apr 13;14(4). pii: E78. doi: 10.3390/md14040078. Review.

19.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Apr 15;12(4):e1005954. doi: 10.1371/journal.pgen.1005954. eCollection 2016 Apr.

20.

Extensive Mobilome-Driven Genome Diversification in Mouse Gut-Associated Bacteroides vulgatus mpk.

Lange A, Beier S, Steimle A, Autenrieth IB, Huson DH, Frick JS.

Genome Biol Evol. 2016 Apr 25;8(4):1197-207. doi: 10.1093/gbe/evw070.

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