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Cited In for PubMed (Select 22368243)


Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

Gordon SP, Tseng E, Salamov A, Zhang J, Meng X, Zhao Z, Kang D, Underwood J, Grigoriev IV, Figueroa M, Schilling JS, Chen F, Wang Z.

PLoS One. 2015 Jul 15;10(7):e0132628. doi: 10.1371/journal.pone.0132628. eCollection 2015.


The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster.

Webster CL, Waldron FM, Robertson S, Crowson D, Ferrari G, Quintana JF, Brouqui JM, Bayne EH, Longdon B, Buck AH, Lazzaro BP, Akorli J, Haddrill PR, Obbard DJ.

PLoS Biol. 2015 Jul 14;13(7):e1002210. doi: 10.1371/journal.pbio.1002210. eCollection 2015 Jul.


Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics.

Hu Z, Scott HS, Qin G, Zheng G, Chu X, Xie L, Adelson DL, Oftedal BE, Venugopal P, Babic M, Hahn CN, Zhang B, Wang X, Li N, Wei C.

Sci Rep. 2015 Jul 9;5:10940. doi: 10.1038/srep10940.


The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies.

O'Rourke JA, Fu F, Bucciarelli B, Yang SS, Samac DA, Lamb JF, Monteros MJ, Graham MA, Gronwald JW, Krom N, Li J, Dai X, Zhao PX, Vance CP.

BMC Genomics. 2015 Jul 7;16:502. doi: 10.1186/s12864-015-1718-7.


Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.

Bikel S, Valdez-Lara A, Cornejo-Granados F, Rico K, Canizales-Quinteros S, SoberĂ³n X, Del Pozo-Yauner L, Ochoa-Leyva A.

Comput Struct Biotechnol J. 2015 Jun 9;13:390-401. doi: 10.1016/j.csbj.2015.06.001. eCollection 2015. Review.


Reptilian Transcriptomes v2.0: An Extensive Resource for Sauropsida Genomics and Transcriptomics.

Tzika AC, Ullate-Agote A, Grbic D, Milinkovitch MC.

Genome Biol Evol. 2015 Jul 1;7(6):1827-41. doi: 10.1093/gbe/evv106.


Occurrence of Isopenicillin-N-Synthase Homologs in Bioluminescent Ctenophores and Implications for Coelenterazine Biosynthesis.

Francis WR, Shaner NC, Christianson LM, Powers ML, Haddock SH.

PLoS One. 2015 Jun 30;10(6):e0128742. doi: 10.1371/journal.pone.0128742. eCollection 2015.


An improved fruit transcriptome and the identification of the candidate genes involved in fruit abscission induced by carbohydrate stress in litchi.

Li C, Wang Y, Huang X, Li J, Wang H, Li J.

Front Plant Sci. 2015 Jun 15;6:439. doi: 10.3389/fpls.2015.00439. eCollection 2015.


De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.

Birol I, Behsaz B, Hammond SA, Kucuk E, Veldhoen N, Helbing CC.

PLoS One. 2015 Jun 29;10(6):e0130720. doi: 10.1371/journal.pone.0130720. eCollection 2015.


A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs.

Sacomoto G, Lacroix V, Sagot MF.

Algorithms Mol Biol. 2015 Jun 27;10:20. doi: 10.1186/s13015-015-0046-4. eCollection 2015.


Bioinformatics-Aided Venomics.

Kaas Q, Craik DJ.

Toxins (Basel). 2015 Jun 11;7(6):2159-87. doi: 10.3390/toxins7062159. Review.


Metatranscriptome Analysis of Fig Flowers Provides Insights into Potential Mechanisms for Mutualism Stability and Gall Induction.

Martinson EO, Hackett JD, Machado CA, Arnold AE.

PLoS One. 2015 Jun 19;10(6):e0130745. doi: 10.1371/journal.pone.0130745. eCollection 2015.


De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways.

Verbruggen B, Bickley LK, Santos EM, Tyler CR, Stentiford GD, Bateman KS, van Aerle R.

BMC Genomics. 2015 Jun 16;16:458. doi: 10.1186/s12864-015-1667-1.


Adoption of conserved developmental genes in development and origin of the medusa body plan.

Kraus JE, Fredman D, Wang W, Khalturin K, Technau U.

Evodevo. 2015 May 29;6:23. doi: 10.1186/s13227-015-0017-3. eCollection 2015.


A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads.

Ikeue D, Schudoma C, Zhang W, Ogata Y, Sakamoto T, Kurata T, Furuhashi T, Kragler F, Aoki K.

Plant Methods. 2015 May 3;11:34. doi: 10.1186/s13007-015-0066-6. eCollection 2015.


De Novo Assembly of Bitter Gourd Transcriptomes: Gene Expression and Sequence Variations in Gynoecious and Monoecious Lines.

Shukla A, Singh VK, Bharadwaj DR, Kumar R, Rai A, Rai AK, Mugasimangalam R, Parameswaran S, Singh M, Naik PS.

PLoS One. 2015 Jun 5;10(6):e0128331. doi: 10.1371/journal.pone.0128331. eCollection 2015.


Transcriptome Characterization of Cymbidium sinense 'Dharma' Using 454 Pyrosequencing and Its Application in the Identification of Genes Associated with Leaf Color Variation.

Zhu G, Yang F, Shi S, Li D, Wang Z, Liu H, Huang D, Wang C.

PLoS One. 2015 Jun 4;10(6):e0128592. doi: 10.1371/journal.pone.0128592. eCollection 2015.


Molecular Diversity and Gene Evolution of the Venom Arsenal of Terebridae Predatory Marine Snails.

Gorson J, Ramrattan G, Verdes A, Wright EM, Kantor Y, Rajaram Srinivasan R, Musunuri R, Packer D, Albano G, Qiu WG, Holford M.

Genome Biol Evol. 2015 May 28;7(6):1761-78. doi: 10.1093/gbe/evv104.


Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in charophycean green algae.

Taujale R, Yin Y.

PLoS One. 2015 May 29;10(5):e0128409. doi: 10.1371/journal.pone.0128409. eCollection 2015.


JAFFA: High sensitivity transcriptome-focused fusion gene detection.

Davidson NM, Majewski IJ, Oshlack A.

Genome Med. 2015 May 11;7(1):43. doi: 10.1186/s13073-015-0167-x. eCollection 2015.

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