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Cited In for PubMed (Select 22086953)


Metazen - metadata capture for metagenomes.

Bischof J, Harrison T, Paczian T, Glass E, Wilke A, Meyer F.

Stand Genomic Sci. 2014 Dec 8;9:18. doi: 10.1186/1944-3277-9-18. eCollection 2014.


Determining microbial products and identifying molecular targets in the human microbiome.

Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C.

Cell Metab. 2014 Nov 4;20(5):731-41. doi: 10.1016/j.cmet.2014.10.003. Epub 2014 Nov 4.


MetaProx: the database of metagenomic proximons.

Vey G, Charles TC.

Database (Oxford). 2014 Oct 6;2014. pii: bau097. doi: 10.1093/database/bau097. Print 2014.


A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes.

Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B, Alawi M, Poehlein A, Chow J, Turaev D, Rattei T, Schmeisser C, Salomon J, Olsen PB, Daniel R, Grundhoff A, Borchert MS, Streit WR.

PLoS One. 2014 Sep 10;9(9):e106707. doi: 10.1371/journal.pone.0106707. eCollection 2014.


Statistical approach of functional profiling for a microbial community.

An L, Pookhao N, Jiang H, Xu J.

PLoS One. 2014 Sep 8;9(9):e106588. doi: 10.1371/journal.pone.0106588. eCollection 2014.


Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M.

Stand Genomic Sci. 2014 Jan 2;9(3):1259-74. doi: 10.4056/sigs.5029016. eCollection 2014 Jun 15.


Comparative analysis of functional metagenomic annotation and the mappability of short reads.

Carr R, Borenstein E.

PLoS One. 2014 Aug 22;9(8):e105776. doi: 10.1371/journal.pone.0105776. eCollection 2014.


Validation of high throughput sequencing and microbial forensics applications.

Budowle B, Connell ND, Bielecka-Oder A, Colwell RR, Corbett CR, Fletcher J, Forsman M, Kadavy DR, Markotic A, Morse SA, Murch RS, Sajantila A, Schmedes SE, Ternus KL, Turner SD, Minot S.

Investig Genet. 2014 Jul 30;5:9. doi: 10.1186/2041-2223-5-9. eCollection 2014. Review.


vanI: a novel D-Ala-D-Lac vancomycin resistance gene cluster found in Desulfitobacterium hafniense.

Kruse T, Levisson M, de Vos WM, Smidt H.

Microb Biotechnol. 2014 Sep;7(5):456-66. doi: 10.1111/1751-7915.12139. Epub 2014 Jul 5.


Microbial succession in the gut: directional trends of taxonomic and functional change in a birth cohort of Spanish infants.

Vallès Y, Artacho A, Pascual-García A, Ferrús ML, Gosalbes MJ, Abellán JJ, Francino MP.

PLoS Genet. 2014 Jun 5;10(6):e1004406. doi: 10.1371/journal.pgen.1004406. eCollection 2014 Jun.


Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community.

Ciric M, Moon CD, Leahy SC, Creevey CJ, Altermann E, Attwood GT, Rakonjac J, Gagic D.

BMC Genomics. 2014 May 12;15:356. doi: 10.1186/1471-2164-15-356.


Metagenomes from the saline desert of kutch.

Pandit AS, Joshi MN, Bhargava P, Ayachit GN, Shaikh IM, Saiyed ZM, Saxena AK, Bagatharia SB.

Genome Announc. 2014 May 15;2(3). pii: e00439-14. doi: 10.1128/genomeA.00439-14.


The use of metagenomic approaches to analyze changes in microbial communities.

Neelakanta G, Sultana H.

Microbiol Insights. 2013 Apr 16;6:37-48. doi: 10.4137/MBI.S10819. eCollection 2013. Review.


Bioinformatic approaches reveal metagenomic characterization of soil microbial community.

Xu Z, Hansen MA, Hansen LH, Jacquiod S, Sørensen SJ.

PLoS One. 2014 Apr 1;9(4):e93445. doi: 10.1371/journal.pone.0093445. eCollection 2014.


Metagenomic sequence of prokaryotic microbiota from an intermediate-salinity pond of a saltern in isla cristina, Spain.

Fernández AB, León MJ, Vera B, Sánchez-Porro C, Ventosa A.

Genome Announc. 2014 Feb 13;2(1). pii: e00045-14. doi: 10.1128/genomeA.00045-14.


MetaMetaDB: a database and analytic system for investigating microbial habitability.

Yang CC, Iwasaki W.

PLoS One. 2014 Jan 27;9(1):e87126. doi: 10.1371/journal.pone.0087126. eCollection 2014.


Diversity and abundance of phosphonate biosynthetic genes in nature.

Yu X, Doroghazi JR, Janga SC, Zhang JK, Circello B, Griffin BM, Labeda DP, Metcalf WW.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20759-64. doi: 10.1073/pnas.1315107110. Epub 2013 Dec 2.


Metagenome sequencing of prokaryotic microbiota from two hypersaline ponds of a marine saltern in santa pola, Spain.

Fernandez AB, Ghai R, Martin-Cuadrado AB, Sanchez-Porro C, Rodriguez-Valera F, Ventosa A.

Genome Announc. 2013 Nov 14;1(6). pii: e00933-13. doi: 10.1128/genomeA.00933-13.


The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.

Nordberg H, Cantor M, Dusheyko S, Hua S, Poliakov A, Shabalov I, Smirnova T, Grigoriev IV, Dubchak I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D26-31. doi: 10.1093/nar/gkt1069. Epub 2013 Nov 12.


EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.

Hunter S, Corbett M, Denise H, Fraser M, Gonzalez-Beltran A, Hunter C, Jones P, Leinonen R, McAnulla C, Maguire E, Maslen J, Mitchell A, Nuka G, Oisel A, Pesseat S, Radhakrishnan R, Rocca-Serra P, Scheremetjew M, Sterk P, Vaughan D, Cochrane G, Field D, Sansone SA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D600-6. doi: 10.1093/nar/gkt961. Epub 2013 Oct 27.

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