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Results: 1 to 20 of 188

1.

Quantitative exploration of the molecular origin of the activation of GTPase.

B RP, Plotnikov NV, Lameira J, Warshel A.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20509-14. doi: 10.1073/pnas.1319854110. Epub 2013 Nov 26.

PMID:
24282301
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction.

Cocco S, Monasson R, Weigt M.

PLoS Comput Biol. 2013;9(8):e1003176. doi: 10.1371/journal.pcbi.1003176. Epub 2013 Aug 22.

PMID:
23990764
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Functional mapping of human dynamin-1-like GTPase domain based on x-ray structure analyses.

Wenger J, Klinglmayr E, Fröhlich C, Eibl C, Gimeno A, Hessenberger M, Puehringer S, Daumke O, Goettig P.

PLoS One. 2013 Aug 19;8(8):e71835. doi: 10.1371/journal.pone.0071835. eCollection 2013.

PMID:
23977156
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Regulation of ribosome biogenesis by nucleostemin 3 promotes local and systemic growth in Drosophila.

Hartl TA, Ni J, Cao J, Suyama KL, Patchett S, Bussiere C, Gui DY, Tang S, Kaplan DD, Fish M, Johnson AW, Scott MP.

Genetics. 2013 May;194(1):101-15. doi: 10.1534/genetics.112.149104. Epub 2013 Feb 22.

PMID:
23436180
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Catalytic mechanism of a mammalian Rab·RabGAP complex in atomic detail.

Gavriljuk K, Gazdag EM, Itzen A, Kötting C, Goody RS, Gerwert K.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21348-53. doi: 10.1073/pnas.1214431110. Epub 2012 Dec 12.

PMID:
23236136
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Ras and GTPase-activating protein (GAP) drive GTP into a precatalytic state as revealed by combining FTIR and biomolecular simulations.

Rudack T, Xia F, Schlitter J, Kötting C, Gerwert K.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15295-300. Epub 2012 Sep 4.

PMID:
22949691
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The role of magnesium for geometry and charge in GTP hydrolysis, revealed by quantum mechanics/molecular mechanics simulations.

Rudack T, Xia F, Schlitter J, Kötting C, Gerwert K.

Biophys J. 2012 Jul 18;103(2):293-302. doi: 10.1016/j.bpj.2012.06.015. Epub 2012 Jul 17.

PMID:
22853907
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.

Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R.

Nat Genet. 2012 Sep;44(9):1006-14. doi: 10.1038/ng.2359. Epub 2012 Jul 29.

PMID:
22842228
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Characterization of a novel activated Ran GTPase mutant and its ability to induce cellular transformation.

Milano SK, Kwon W, Pereira R, Antonyak MA, Cerione RA.

J Biol Chem. 2012 Jul 20;287(30):24955-66. doi: 10.1074/jbc.M111.306514. Epub 2012 Jun 7.

PMID:
22679017
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

YeiR: a metal-binding GTPase from Escherichia coli involved in metal homeostasis.

Blaby-Haas CE, Flood JA, Crécy-Lagard Vd, Zamble DB.

Metallomics. 2012 May;4(5):488-97. doi: 10.1039/c2mt20012k. Epub 2012 Apr 17.

PMID:
22511334
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Cdc73 subunit of Paf1 complex contains C-terminal Ras-like domain that promotes association of Paf1 complex with chromatin.

Amrich CG, Davis CP, Rogal WP, Shirra MK, Heroux A, Gardner RG, Arndt KM, VanDemark AP.

J Biol Chem. 2012 Mar 30;287(14):10863-75. doi: 10.1074/jbc.M111.325647. Epub 2012 Feb 8.

PMID:
22318720
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Role of Gln61 in HRas GTP hydrolysis: a quantum mechanics/molecular mechanics study.

Martín-García F, Mendieta-Moreno JI, López-Viñas E, Gómez-Puertas P, Mendieta J.

Biophys J. 2012 Jan 4;102(1):152-7. doi: 10.1016/j.bpj.2011.11.4005. Epub 2012 Jan 3. Erratum in: Biophys J. 2012 Mar 7;102(5):1234.

PMID:
22225809
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A metal switch for controlling the activity of molecular motor proteins.

Cochran JC, Zhao YC, Wilcox DE, Kull FJ.

Nat Struct Mol Biol. 2011 Dec 25;19(1):122-7. doi: 10.1038/nsmb.2190.

PMID:
22198464
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M.

Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):E1293-301. doi: 10.1073/pnas.1111471108. Epub 2011 Nov 21.

PMID:
22106262
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers.

Araki M, Shima F, Yoshikawa Y, Muraoka S, Ijiri Y, Nagahara Y, Shirono T, Kataoka T, Tamura A.

J Biol Chem. 2011 Nov 11;286(45):39644-53. doi: 10.1074/jbc.M111.227074. Epub 2011 Sep 19.

PMID:
21930707
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Unique structural and nucleotide exchange features of the Rho1 GTPase of Entamoeba histolytica.

Bosch DE, Wittchen ES, Qiu C, Burridge K, Siderovski DP.

J Biol Chem. 2011 Nov 11;286(45):39236-46. doi: 10.1074/jbc.M111.253898. Epub 2011 Sep 19.

PMID:
21930699
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Nucleotide pyrophosphatase employs a P-loop-like motif to enhance catalytic power and NDP/NTP discrimination.

Pécsi I, Szabó JE, Adams SD, Simon I, Sellers JR, Vértessy BG, Tóth J.

Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14437-42. doi: 10.1073/pnas.1013872108. Epub 2011 Aug 10.

PMID:
21831832
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A switch I mutant of Cdc42 exhibits less conformational freedom.

Chandrashekar R, Salem O, Krizova H, McFeeters R, Adams PD.

Biochemistry. 2011 Jul 19;50(28):6196-207. doi: 10.1021/bi2004284. Epub 2011 Jun 24.

PMID:
21667996
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome.

Adamczyk AJ, Warshel A.

Proc Natl Acad Sci U S A. 2011 Jun 14;108(24):9827-32. doi: 10.1073/pnas.1105714108. Epub 2011 May 26.

PMID:
21617092
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Crystal structure of the intraflagellar transport complex 25/27.

Bhogaraju S, Taschner M, Morawetz M, Basquin C, Lorentzen E.

EMBO J. 2011 May 18;30(10):1907-18. doi: 10.1038/emboj.2011.110. Epub 2011 Apr 19.

PMID:
21505417
[PubMed - indexed for MEDLINE]
Free PMC Article

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