Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 63


Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data.

Wu Y, Shi B, Ding X, Liu T, Hu X, Yip KY, Yang ZR, Mathews DH, Lu ZJ.

Nucleic Acids Res. 2015 Sep 3;43(15):7247-59. doi: 10.1093/nar/gkv706. Epub 2015 Jul 13.


Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines.

Lynch BT, Patrick TL, Moreno JJ, Siebert AE, Klusman KM, Shodja DN, Hannah LC, Lal SK.

G3 (Bethesda). 2015 Jun 12;5(8):1703-11. doi: 10.1534/g3.115.018630.


Decoding mechanisms by which silent codon changes influence protein biogenesis and function.

Bali V, Bebok Z.

Int J Biochem Cell Biol. 2015 Jul;64:58-74. doi: 10.1016/j.biocel.2015.03.011. Epub 2015 Mar 26. Review.


Structural imprints in vivo decode RNA regulatory mechanisms.

Spitale RC, Flynn RA, Zhang QC, Crisalli P, Lee B, Jung JW, Kuchelmeister HY, Batista PJ, Torre EA, Kool ET, Chang HY.

Nature. 2015 Mar 26;519(7544):486-90. doi: 10.1038/nature14263. Epub 2015 Mar 18. Erratum in: Nature. 2015 Nov 12;527(7577):264.


hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.

Sugimoto Y, Vigilante A, Darbo E, Zirra A, Militti C, D'Ambrogio A, Luscombe NM, Ule J.

Nature. 2015 Mar 26;519(7544):491-4. doi: 10.1038/nature14280. Epub 2015 Mar 18.


Mo-CBP3, an antifungal chitin-binding protein from Moringa oleifera seeds, is a member of the 2S albumin family.

Freire JE, Vasconcelos IM, Moreno FB, Batista AB, Lobo MD, Pereira ML, Lima JP, Almeida RV, Sousa AJ, Monteiro-Moreira AC, Oliveira JT, Grangeiro TB.

PLoS One. 2015 Mar 19;10(3):e0119871. doi: 10.1371/journal.pone.0119871. eCollection 2015.


Species differential regulation of COX2 can be described by an NFκB-dependent logic AND gate.

Nguyen LK, Cavadas MA, Kholodenko BN, Frank TD, Cheong A.

Cell Mol Life Sci. 2015 Jun;72(12):2431-43. doi: 10.1007/s00018-015-1850-1. Epub 2015 Feb 20.


Computational analysis of RNA structures with chemical probing data.

Ge P, Zhang S.

Methods. 2015 Jun;79-80:60-6. doi: 10.1016/j.ymeth.2015.02.003. Epub 2015 Feb 14. Review.


Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis.

Kong Y, Peña MJ, Renna L, Avci U, Pattathil S, Tuomivaara ST, Li X, Reiter WD, Brandizzi F, Hahn MG, Darvill AG, York WS, O'Neill MA.

Plant Physiol. 2015 Apr;167(4):1296-306. doi: 10.1104/pp.114.255943. Epub 2015 Feb 11.


RNAMotifScanX: a graph alignment approach for RNA structural motif identification.

Zhong C, Zhang S.

RNA. 2015 Mar;21(3):333-46. doi: 10.1261/rna.044891.114. Epub 2015 Jan 16.


Dynamic response of RNA editing to temperature in Drosophila.

Rieder LE, Savva YA, Reyna MA, Chang YJ, Dorsky JS, Rezaei A, Reenan RA.

BMC Biol. 2015 Jan 3;13:1. doi: 10.1186/s12915-014-0111-3.


FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies.

Kück P, Longo GC.

Front Zool. 2014 Nov 18;11(1):81. doi: 10.1186/s12983-014-0081-x. eCollection 2014.


Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence.

Sowa SW, Vazquez-Anderson J, Clark CA, De La Peña R, Dunn K, Fung EK, Khoury MJ, Contreras LM.

Nucleic Acids Res. 2015 Jan;43(2):e13. doi: 10.1093/nar/gku1191. Epub 2014 Nov 21.


Computational Methods for CLIP-seq Data Processing.

Reyes-Herrera PH, Ficarra E.

Bioinform Biol Insights. 2014 Oct 1;8:199-207. doi: 10.4137/BBI.S16803. eCollection 2014. Review.


Signature gene expression reveals novel clues to the molecular mechanisms of dimorphic transition in Penicillium marneffei.

Yang E, Chow WN, Wang G, Woo PC, Lau SK, Yuen KY, Lin X, Cai JJ.

PLoS Genet. 2014 Oct 16;10(10):e1004662. doi: 10.1371/journal.pgen.1004662. eCollection 2014 Oct.


Chemical probing of RNA with the hydroxyl radical at single-atom resolution.

Ingle S, Azad RN, Jain SS, Tullius TD.

Nucleic Acids Res. 2014 Nov 10;42(20):12758-67. doi: 10.1093/nar/gku934. Epub 2014 Oct 13.


SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.

Loughrey D, Watters KE, Settle AH, Lucks JB.

Nucleic Acids Res. 2014 Dec 1;42(21). doi: 10.1093/nar/gku909. Epub 2014 Oct 10.


How to find RNA thermometers.

Righetti F, Narberhaus F.

Front Cell Infect Microbiol. 2014 Sep 18;4:132. doi: 10.3389/fcimb.2014.00132. eCollection 2014. Review.


NoFold: RNA structure clustering without folding or alignment.

Middleton SA, Kim J.

RNA. 2014 Nov;20(11):1671-83. doi: 10.1261/rna.041913.113. Epub 2014 Sep 18.


LncRBase: an enriched resource for lncRNA information.

Chakraborty S, Deb A, Maji RK, Saha S, Ghosh Z.

PLoS One. 2014 Sep 18;9(9):e108010. doi: 10.1371/journal.pone.0108010. eCollection 2014.

Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk