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Cited In for PubMed (Select 21799941)


CallSim: Evaluation of Base Calls Using Sequencing Simulation.

Morrow JD, Higgs BW.

ISRN Bioinform. 2012 Dec 12;2012:371718. doi: 10.5402/2012/371718. eCollection 2012.


Whole-Genome Sequencing in Outbreak Analysis.

Gilchrist CA, Turner SD, Riley MF, Petri WA Jr, Hewlett EL.

Clin Microbiol Rev. 2015 Jul;28(3):541-563. Review.


GeneSippr: A Rapid Whole-Genome Approach for the Identification and Characterization of Foodborne Pathogens such as Priority Shiga Toxigenic Escherichia coli.

Lambert D, Carrillo CD, Koziol AG, Manninger P, Blais BW.

PLoS One. 2015 Apr 10;10(4):e0122928. doi: 10.1371/journal.pone.0122928. eCollection 2015.


Rapid High Resolution Genotyping of Francisella tularensis by Whole Genome Sequence Comparison of Annotated Genes ("MLST+").

Antwerpen MH, Prior K, Mellmann A, Höppner S, Splettstoesser WD, Harmsen D.

PLoS One. 2015 Apr 9;10(4):e0123298. doi: 10.1371/journal.pone.0123298. eCollection 2015.


Approaches to treatment of emerging Shiga toxin-producing Escherichia coli infections highlighting the O104:H4 serotype.

Rahal EA, Fadlallah SM, Nassar FJ, Kazzi N, Matar GM.

Front Cell Infect Microbiol. 2015 Mar 18;5:24. doi: 10.3389/fcimb.2015.00024. eCollection 2015. Review.


Comparative Genomic Analysis of Two Novel Sporadic Shiga Toxin-Producing Escherichia coli O104:H4 Strains Isolated 2011 in Germany.

Tietze E, Dabrowski PW, Prager R, Radonic A, Fruth A, Auraß P, Nitsche A, Mielke M, Flieger A.

PLoS One. 2015 Apr 2;10(4):e0122074. doi: 10.1371/journal.pone.0122074. eCollection 2015.


How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health.

Kuznetsov V, Lee HK, Maurer-Stroh S, Molnár MJ, Pongor S, Eisenhaber B, Eisenhaber F.

Health Inf Sci Syst. 2013 Jan 10;1:2. doi: 10.1186/2047-2501-1-2. eCollection 2013. Review.


Rapid genome resequencing of an atoxigenic strain of Aspergillus carbonarius.

Cabañes FJ, Sanseverino W, Castellá G, Bragulat MR, Cigliano RA, Sánchez A.

Sci Rep. 2015 Mar 13;5:9086. doi: 10.1038/srep09086.


Evolutionary adaptation of an AraC-like regulatory protein in Citrobacter rodentium and Escherichia species.

Tan A, Petty NK, Hocking D, Bennett-Wood V, Wakefield M, Praszkier J, Tauschek M, Yang J, Robins-Browne R.

Infect Immun. 2015 Apr;83(4):1384-95. doi: 10.1128/IAI.02697-14. Epub 2015 Jan 26.


Prevalence of virulence determinants and antimicrobial resistance among commensal Escherichia coli derived from dairy and beef cattle.

Bok E, Mazurek J, Stosik M, Wojciech M, Baldy-Chudzik K.

Int J Environ Res Public Health. 2015 Jan 19;12(1):970-85. doi: 10.3390/ijerph120100970.


Clinical detection and characterization of bacterial pathogens in the genomics era.

Fournier PE, Dubourg G, Raoult D.

Genome Med. 2014 Nov 29;6(11):114. doi: 10.1186/s13073-014-0114-2. eCollection 2014.


WGS Analysis and Interpretation in Clinical and Public Health Microbiology Laboratories: What Are the Requirements and How Do Existing Tools Compare?

Wyres KL, Conway TC, Garg S, Queiroz C, Reumann M, Holt K, Rusu LI.

Pathogens. 2014 Jun 11;3(2):437-58. doi: 10.3390/pathogens3020437. Review.


Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.

Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI, Engelthaler DM.

J Clin Microbiol. 2015 Jan;53(1):212-8. doi: 10.1128/JCM.02332-14. Epub 2014 Nov 5.


The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility.

Kos VN, Déraspe M, McLaughlin RE, Whiteaker JD, Roy PH, Alm RA, Corbeil J, Gardner H.

Antimicrob Agents Chemother. 2015 Jan;59(1):427-36. doi: 10.1128/AAC.03954-14. Epub 2014 Nov 3.


Cyclic-di-GMP signalling and biofilm-related properties of the Shiga toxin-producing 2011 German outbreak Escherichia coli O104:H4.

Richter AM, Povolotsky TL, Wieler LH, Hengge R.

EMBO Mol Med. 2014 Oct 31;6(12):1622-37. doi: 10.15252/emmm.201404309.


Enteroaggregative Shiga toxin-producing Escherichia coli of serotype O104:H4 in Belgium and Luxembourg.

De Rauw K, Vincken S, Garabedian L, Levtchenko E, Hubloue I, Verhaegen J, Craeghs J, Glupczynski Y, Mossong J, Piérard D.

New Microbes New Infect. 2014 Sep;2(5):138-43. doi: 10.1002/nmi2.58. Epub 2014 Aug 5.


Emerging rapid resistance testing methods for clinical microbiology laboratories and their potential impact on patient management.

Frickmann H, Masanta WO, Zautner AE.

Biomed Res Int. 2014;2014:375681. doi: 10.1155/2014/375681. Epub 2014 Sep 17.


An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella.

Pettengill JB, Luo Y, Davis S, Chen Y, Gonzalez-Escalona N, Ottesen A, Rand H, Allard MW, Strain E.

PeerJ. 2014 Oct 14;2:e620. doi: 10.7717/peerj.620. eCollection 2014.


Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA).

Bergonier D, Sobral D, Feßler AT, Jacquet E, Gilbert FB, Schwarz S, Treilles M, Bouloc P, Pourcel C, Vergnaud G.

Vet Res. 2014 Oct 2;45(1):97. doi: 10.1186/s13567-014-0097-4.


Different expression patterns of genes from the exo-xis region of bacteriophage λ and Shiga toxin-converting bacteriophage Ф24B following infection or prophage induction in Escherichia coli.

Bloch S, Nejman-Faleńczyk B, Dydecka A, Łoś JM, Felczykowska A, Węgrzyn A, Węgrzyn G.

PLoS One. 2014 Oct 13;9(10):e108233. doi: 10.1371/journal.pone.0108233. eCollection 2014.

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