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Results: 1 to 20 of 31

Cited In for PubMed (Select 21633945)

1.

Epstein-Barr virus transcription factor Zta acts through distal regulatory elements to directly control cellular gene expression.

Ramasubramanyan S, Osborn K, Al-Mohammad R, Naranjo Perez-Fernandez IB, Zuo J, Balan N, Godfrey A, Patel H, Peters G, Rowe M, Jenner RG, Sinclair AJ.

Nucleic Acids Res. 2015 Apr 20;43(7):3563-77. doi: 10.1093/nar/gkv212. Epub 2015 Mar 16.

2.

Disruption of DNA-methylation-dependent long gene repression in Rett syndrome.

Gabel HW, Kinde B, Stroud H, Gilbert CS, Harmin DA, Kastan NR, Hemberg M, Ebert DH, Greenberg ME.

Nature. 2015 Jun 4;522(7554):89-93. doi: 10.1038/nature14319. Epub 2015 Mar 11.

PMID:
25762136
3.

Discovery of transcription factors and regulatory regions driving in vivo tumor development by ATAC-seq and FAIRE-seq open chromatin profiling.

Davie K, Jacobs J, Atkins M, Potier D, Christiaens V, Halder G, Aerts S.

PLoS Genet. 2015 Feb 13;11(2):e1004994. doi: 10.1371/journal.pgen.1004994. eCollection 2015 Feb.

4.

Expression and regulation of long noncoding RNAs in TLR4 signaling in mouse macrophages.

Mao AP, Shen J, Zuo Z.

BMC Genomics. 2015 Feb 5;16:45. doi: 10.1186/s12864-015-1270-5.

5.

Chromatin accessibility: a window into the genome.

Tsompana M, Buck MJ.

Epigenetics Chromatin. 2014 Nov 20;7(1):33. doi: 10.1186/1756-8935-7-33. eCollection 2014. Review.

6.

Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes.

Sethi I, Sinha S, Buck MJ.

BMC Genomics. 2014 Nov 29;15:1042. doi: 10.1186/1471-2164-15-1042.

7.

A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation.

Dubois-Chevalier J, Oger F, Dehondt H, Firmin FF, Gheeraert C, Staels B, Lefebvre P, Eeckhoute J.

Nucleic Acids Res. 2014;42(17):10943-59. doi: 10.1093/nar/gku780. Epub 2014 Sep 2.

8.

Network analysis of ChIP-Seq data reveals key genes in prostate cancer.

Zhang Y, Huang Z, Zhu Z, Liu J, Zheng X, Zhang Y.

Eur J Med Res. 2014 Sep 3;19:47. doi: 10.1186/s40001-014-0047-7.

9.

Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees.

Liu L, Missirian V, Zinkgraf M, Groover A, Filkov V.

BMC Genomics. 2014;15 Suppl 5:S3. doi: 10.1186/1471-2164-15-S5-S3. Epub 2014 Jul 14.

10.

Distinct and separable roles for EZH2 in neurogenic astroglia.

Hwang WW, Salinas RD, Siu JJ, Kelley KW, Delgado RN, Paredes MF, Alvarez-Buylla A, Oldham MC, Lim DA.

Elife. 2014 May 27;3:e02439. doi: 10.7554/eLife.02439.

11.

Key tumor suppressor genes inactivated by "greater promoter" methylation and somatic mutations in head and neck cancer.

Guerrero-Preston R, Michailidi C, Marchionni L, Pickering CR, Frederick MJ, Myers JN, Yegnasubramanian S, Hadar T, Noordhuis MG, Zizkova V, Fertig E, Agrawal N, Westra W, Koch W, Califano J, Velculescu VE, Sidransky D.

Epigenetics. 2014 Jul;9(7):1031-46. doi: 10.4161/epi.29025. Epub 2014 May 1.

12.

Nucleosome eviction and multiple co-factor binding predict estrogen-receptor-alpha-associated long-range interactions.

He C, Wang X, Zhang MQ.

Nucleic Acids Res. 2014 Jun;42(11):6935-44. doi: 10.1093/nar/gku327. Epub 2014 Apr 29.

13.

Extreme HOT regions are CpG-dense promoters in C. elegans and humans.

Chen RA, Stempor P, Down TA, Zeiser E, Feuer SK, Ahringer J.

Genome Res. 2014 Jul;24(7):1138-46. doi: 10.1101/gr.161992.113. Epub 2014 Mar 20.

14.

Epigenetic reprogramming in Mist1(-/-) mice predicts the molecular response to cerulein-induced pancreatitis.

Mehmood R, Varga G, Mohanty SQ, Laing SW, Lu Y, Johnson CL, Kharitonenkov A, Pin CL.

PLoS One. 2014 Jan 21;9(1):e84182. doi: 10.1371/journal.pone.0084182. eCollection 2014.

15.

ChIP-seq analysis of histone H3K9 trimethylation in peripheral blood mononuclear cells of membranous nephropathy patients.

Sui WG, He HY, Yan Q, Chen JJ, Zhang RH, Dai Y.

Braz J Med Biol Res. 2014 Jan;47(1):42-9. doi: 10.1590/1414-431X20132809. Epub 2013 Dec 12.

16.

The oncogenic polycomb histone methyltransferase EZH2 methylates lysine 120 on histone H2B and competes ubiquitination.

Kogure M, Takawa M, Saloura V, Sone K, Piao L, Ueda K, Ibrahim R, Tsunoda T, Sugiyama M, Atomi Y, Nakamura Y, Hamamoto R.

Neoplasia. 2013 Nov;15(11):1251-61.

17.

Fine tuning of craniofacial morphology by distant-acting enhancers.

Attanasio C, Nord AS, Zhu Y, Blow MJ, Li Z, Liberton DK, Morrison H, Plajzer-Frick I, Holt A, Hosseini R, Phouanenavong S, Akiyama JA, Shoukry M, Afzal V, Rubin EM, FitzPatrick DR, Ren B, Hallgrímsson B, Pennacchio LA, Visel A.

Science. 2013 Oct 25;342(6157):1241006. doi: 10.1126/science.1241006.

18.

The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex.

Prensner JR, Iyer MK, Sahu A, Asangani IA, Cao Q, Patel L, Vergara IA, Davicioni E, Erho N, Ghadessi M, Jenkins RB, Triche TJ, Malik R, Bedenis R, McGregor N, Ma T, Chen W, Han S, Jing X, Cao X, Wang X, Chandler B, Yan W, Siddiqui J, Kunju LP, Dhanasekaran SM, Pienta KJ, Feng FY, Chinnaiyan AM.

Nat Genet. 2013 Nov;45(11):1392-8. doi: 10.1038/ng.2771. Epub 2013 Sep 29.

19.

Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia.

Nordlund J, Bäcklin CL, Wahlberg P, Busche S, Berglund EC, Eloranta ML, Flaegstad T, Forestier E, Frost BM, Harila-Saari A, Heyman M, Jónsson OG, Larsson R, Palle J, Rönnblom L, Schmiegelow K, Sinnett D, Söderhäll S, Pastinen T, Gustafsson MG, Lönnerholm G, Syvänen AC.

Genome Biol. 2013 Sep 24;14(9):r105. doi: 10.1186/gb-2013-14-9-r105.

20.

A comprehensive functional portrait of two heat shock factor-type transcriptional regulators involved in Candida albicans morphogenesis and virulence.

Znaidi S, Nesseir A, Chauvel M, Rossignol T, d'Enfert C.

PLoS Pathog. 2013 Aug;9(8):e1003519. doi: 10.1371/journal.ppat.1003519. Epub 2013 Aug 15.

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