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Items: 1 to 20 of 157

1.

Whole genome nucleosome sequencing identifies novel types of forensic markers in degraded DNA samples.

Dong CN, Yang YD, Li SJ, Yang YR, Zhang XJ, Fang XD, Yan JW, Cong B.

Sci Rep. 2016 May 18;6:26101. doi: 10.1038/srep26101.

2.

Nuclease Footprints in Sperm Project Past and Future Chromatin Regulatory Events.

Johnson GD, Jodar M, Pique-Regi R, Krawetz SA.

Sci Rep. 2016 May 17;6:25864. doi: 10.1038/srep25864.

3.

The Chromatin Remodelling Enzymes SNF2H and SNF2L Position Nucleosomes adjacent to CTCF and Other Transcription Factors.

Wiechens N, Singh V, Gkikopoulos T, Schofield P, Rocha S, Owen-Hughes T.

PLoS Genet. 2016 Mar 28;12(3):e1005940. doi: 10.1371/journal.pgen.1005940. eCollection 2016 Mar. Erratum in: PLoS Genet. 2016 May;12(5):e1006086.

4.

Nucleosomes impede Cas9 access to DNA in vivo and in vitro.

Horlbeck MA, Witkowsky LB, Guglielmi B, Replogle JM, Gilbert LA, Villalta JE, Torigoe SE, Tjian R, Weissman JS.

Elife. 2016 Mar 17;5. pii: e12677. doi: 10.7554/eLife.12677.

5.

Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay.

Sos BC, Fung HL, Gao DR, Osothprarop TF, Kia A, He MM, Zhang K.

Genome Biol. 2016 Feb 4;17:20. doi: 10.1186/s13059-016-0882-7.

6.

Nucleosome architecture throughout the cell cycle.

Deniz Ö, Flores O, Aldea M, Soler-López M, Orozco M.

Sci Rep. 2016 Jan 28;6:19729. doi: 10.1038/srep19729.

7.

Exploration of nucleosome positioning patterns in transcription factor function.

Maehara K, Ohkawa Y.

Sci Rep. 2016 Jan 21;6:19620. doi: 10.1038/srep19620.

8.

Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.

Snyder MW, Kircher M, Hill AJ, Daza RM, Shendure J.

Cell. 2016 Jan 14;164(1-2):57-68. doi: 10.1016/j.cell.2015.11.050.

PMID:
26771485
9.

Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic Technologies.

Yan H, Tian S, Slager SL, Sun Z, Ordog T.

Am J Epidemiol. 2016 Jan 15;183(2):96-109. doi: 10.1093/aje/kwv187. Epub 2015 Dec 30.

PMID:
26721890
10.

Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation.

Ivanov M, Baranova A, Butler T, Spellman P, Mileyko V.

BMC Genomics. 2015;16 Suppl 13:S1. doi: 10.1186/1471-2164-16-S13-S1. Epub 2015 Dec 16.

11.

Integrin α4β1 controls G9a activity that regulates epigenetic changes and nuclear properties required for lymphocyte migration.

Zhang X, Cook PC, Zindy E, Williams CJ, Jowitt TA, Streuli CH, MacDonald AS, Redondo-Muñoz J.

Nucleic Acids Res. 2016 Apr 20;44(7):3031-44. doi: 10.1093/nar/gkv1348. Epub 2015 Dec 10.

12.

Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia.

Wu JN, Pinello L, Yissachar E, Wischhusen JW, Yuan GC, Roberts CW.

Epigenetics Chromatin. 2015 Dec 2;8:53. doi: 10.1186/s13072-015-0046-0. eCollection 2015.

13.

Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.

Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.

BMC Genomics. 2015 Nov 19;16:978. doi: 10.1186/s12864-015-2198-5.

14.

Influence of quasi-specific sites on kinetics of target DNA search by a sequence-specific DNA-binding protein.

Kemme CA, Esadze A, Iwahara J.

Biochemistry. 2015 Nov 10;54(44):6684-91. doi: 10.1021/acs.biochem.5b00967. Epub 2015 Nov 2.

15.

Epigenomics and the structure of the living genome.

Friedman N, Rando OJ.

Genome Res. 2015 Oct;25(10):1482-90. doi: 10.1101/gr.190165.115.

16.

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Chereji RV, Kan TW, Grudniewska MK, Romashchenko AV, Berezikov E, Zhimulev IF, Guryev V, Morozov AV, Moshkin YM.

Nucleic Acids Res. 2016 Feb 18;44(3):1036-51. doi: 10.1093/nar/gkv978. Epub 2015 Oct 1.

17.

Regulation of Nucleosome Architecture and Factor Binding Revealed by Nuclease Footprinting of the ESC Genome.

Hainer SJ, Fazzio TG.

Cell Rep. 2015 Oct 6;13(1):61-9. doi: 10.1016/j.celrep.2015.08.071. Epub 2015 Sep 24.

18.

Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo.

Schulz KN, Bondra ER, Moshe A, Villalta JE, Lieb JD, Kaplan T, McKay DJ, Harrison MM.

Genome Res. 2015 Nov;25(11):1715-26. doi: 10.1101/gr.192682.115. Epub 2015 Sep 2.

19.

DNA-guided establishment of nucleosome patterns within coding regions of a eukaryotic genome.

Beh LY, Müller MM, Muir TW, Kaplan N, Landweber LF.

Genome Res. 2015 Nov;25(11):1727-38. doi: 10.1101/gr.188516.114. Epub 2015 Sep 1.

20.

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.

Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ.

Genome Res. 2015 Nov;25(11):1757-70. doi: 10.1101/gr.192294.115. Epub 2015 Aug 27.

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