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Items: 1 to 20 of 35

1.

Genomics and the making of yeast biodiversity.

Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP.

Curr Opin Genet Dev. 2015 Dec;35:100-9. doi: 10.1016/j.gde.2015.10.008. Epub 2015 Nov 30. Review.

PMID:
26649756
2.

Short linear motifs - ex nihilo evolution of protein regulation.

Davey NE, Cyert MS, Moses AM.

Cell Commun Signal. 2015 Nov 21;13:43. doi: 10.1186/s12964-015-0120-z. Review.

3.

Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets.

Hogan GJ, Brown PO, Herschlag D.

PLoS Biol. 2015 Nov 20;13(11):e1002307. doi: 10.1371/journal.pbio.1002307. eCollection 2015.

4.

Mechanisms of mutational robustness in transcriptional regulation.

Payne JL, Wagner A.

Front Genet. 2015 Oct 27;6:322. doi: 10.3389/fgene.2015.00322. eCollection 2015. Review.

5.

Uncovering Phosphorylation-Based Specificities through Functional Interaction Networks.

Wagih O, Sugiyama N, Ishihama Y, Beltrao P.

Mol Cell Proteomics. 2016 Jan;15(1):236-45. doi: 10.1074/mcp.M115.052357. Epub 2015 Nov 16.

PMID:
26572964
6.

Genome-Wide Chromatin Immunoprecipitation in Candida albicans and Other Yeasts.

Lohse MB, Kongsomboonvech P, Madrigal M, Hernday AD, Nobile CJ.

Methods Mol Biol. 2016;1361:161-84. doi: 10.1007/978-1-4939-3079-1_10.

7.

When natural selection gives gene function the cold shoulder.

Cutter AD, Jovelin R.

Bioessays. 2015 Nov;37(11):1169-73. doi: 10.1002/bies.201500083. Epub 2015 Sep 28. Review.

PMID:
26411745
8.

Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana.

Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH.

Plant Physiol. 2015 Aug;168(4):1717-34. doi: 10.1104/pp.15.00689. Epub 2015 Jun 23.

9.

Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites.

Anderson DW, McKeown AN, Thornton JW.

Elife. 2015 Jun 15;4:e07864. doi: 10.7554/eLife.07864.

10.

Making sense of transcription networks.

Sorrells TR, Johnson AD.

Cell. 2015 May 7;161(4):714-23. doi: 10.1016/j.cell.2015.04.014. Review.

11.

Accurate identification of centromere locations in yeast genomes using Hi-C.

Varoquaux N, Liachko I, Ay F, Burton JN, Shendure J, Dunham MJ, Vert JP, Noble WS.

Nucleic Acids Res. 2015 Jun 23;43(11):5331-9. doi: 10.1093/nar/gkv424. Epub 2015 May 4.

12.

Pervasive variation of transcription factor orthologs contributes to regulatory network evolution.

Nadimpalli S, Persikov AV, Singh M.

PLoS Genet. 2015 Mar 6;11(3):e1005011. doi: 10.1371/journal.pgen.1005011. eCollection 2015 Mar.

13.

Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks.

Cheatle Jarvela AM, Hinman VF.

Evodevo. 2015 Jan 29;6(1):3. doi: 10.1186/2041-9139-6-3. eCollection 2015. Review.

14.

Evolutionary cell biology: two origins, one objective.

Lynch M, Field MC, Goodson HV, Malik HS, Pereira-Leal JB, Roos DS, Turkewitz AP, Sazer S.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):16990-4. doi: 10.1073/pnas.1415861111. Epub 2014 Nov 17.

15.

Hybrid incompatibility despite pleiotropic constraint in a sequence-based bioenergetic model of transcription factor binding.

Tulchinsky AY, Johnson NA, Porter AH.

Genetics. 2014 Dec;198(4):1645-54. doi: 10.1534/genetics.114.171397. Epub 2014 Oct 13.

16.

Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module.

McKeown AN, Bridgham JT, Anderson DW, Murphy MN, Ortlund EA, Thornton JW.

Cell. 2014 Sep 25;159(1):58-68. doi: 10.1016/j.cell.2014.09.003.

17.

Lager yeast comes of age.

Wendland J.

Eukaryot Cell. 2014 Oct;13(10):1256-65. doi: 10.1128/EC.00134-14. Epub 2014 Aug 1. Review.

18.

Diversification of transcription factor paralogs via noncanonical modularity in C2H2 zinc finger DNA binding.

Siggers T, Reddy J, Barron B, Bulyk ML.

Mol Cell. 2014 Aug 21;55(4):640-8. doi: 10.1016/j.molcel.2014.06.019. Epub 2014 Jul 17.

19.

Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks.

Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF.

Mol Biol Evol. 2014 Oct;31(10):2672-88. doi: 10.1093/molbev/msu213. Epub 2014 Jul 12.

20.

Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps.

Burton JN, Liachko I, Dunham MJ, Shendure J.

G3 (Bethesda). 2014 May 22;4(7):1339-46. doi: 10.1534/g3.114.011825.

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