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Items: 1 to 20 of 33


Dynamics of the Ligand Binding Domain Layer during AMPA Receptor Activation.

Baranovic J, Chebli M, Salazar H, Carbone AL, Faelber K, Lau AY, Daumke O, Plested AJ.

Biophys J. 2016 Feb 23;110(4):896-911. doi: 10.1016/j.bpj.2015.12.033.


Structural Determinants for the Binding of Morphinan Agonists to the μ-Opioid Receptor.

Cong X, Campomanes P, Kless A, Schapitz I, Wagener M, Koch T, Carloni P.

PLoS One. 2015 Aug 17;10(8):e0135998. doi: 10.1371/journal.pone.0135998. eCollection 2015.


Cooperative Dynamics of Intact AMPA and NMDA Glutamate Receptors: Similarities and Subfamily-Specific Differences.

Dutta A, Krieger J, Lee JY, Garcia-Nafria J, Greger IH, Bahar I.

Structure. 2015 Sep 1;23(9):1692-704. doi: 10.1016/j.str.2015.07.002. Epub 2015 Aug 6.


Emerging structural insights into the function of ionotropic glutamate receptors.

Karakas E, Regan MC, Furukawa H.

Trends Biochem Sci. 2015 Jun;40(6):328-37. doi: 10.1016/j.tibs.2015.04.002. Epub 2015 May 1. Review.


Mechanism-Based Mathematical Model for Gating of Ionotropic Glutamate Receptors.

Dai J, Wollmuth LP, Zhou HX.

J Phys Chem B. 2015 Aug 27;119(34):10934-40. doi: 10.1021/acs.jpcb.5b00521. Epub 2015 Apr 1.


Error-based extraction of states and energy landscapes from experimental single-molecule time-series.

Taylor JN, Li CB, Cooper DR, Landes CF, Komatsuzaki T.

Sci Rep. 2015 Mar 17;5:9174. doi: 10.1038/srep09174.


Novel inhibitors induce large conformational changes of GAB1 pleckstrin homology domain and kill breast cancer cells.

Chen L, Du-Cuny L, Moses S, Dumas S, Song Z, Rezaeian AH, Lin HK, Meuillet EJ, Zhang S.

PLoS Comput Biol. 2015 Jan 8;11(1):e1004021. doi: 10.1371/journal.pcbi.1004021. eCollection 2015 Jan.


Structure and gating of tetrameric glutamate receptors.

Sobolevsky AI.

J Physiol. 2015 Jan 1;593(1):29-38. doi: 10.1113/jphysiol.2013.264911. Epub 2013 Nov 25. Review.


Reduced curvature of ligand-binding domain free-energy surface underlies partial agonism at NMDA receptors.

Dai J, Zhou HX.

Structure. 2015 Jan 6;23(1):228-36. doi: 10.1016/j.str.2014.11.012. Epub 2014 Dec 24.


Stargazin promotes closure of the AMPA receptor ligand-binding domain.

MacLean DM, Ramaswamy SS, Du M, Howe JR, Jayaraman V.

J Gen Physiol. 2014 Dec;144(6):503-12. doi: 10.1085/jgp.201411287.


Structure and dynamics of AMPA receptor GluA2 in resting, pre-open, and desensitized states.

Dürr KL, Chen L, Stein RA, De Zorzi R, Folea IM, Walz T, Mchaourab HS, Gouaux E.

Cell. 2014 Aug 14;158(4):778-92. doi: 10.1016/j.cell.2014.07.023. Epub 2014 Aug 7.


Structure of an agonist-bound ionotropic glutamate receptor.

Yelshanskaya MV, Li M, Sobolevsky AI.

Science. 2014 Aug 29;345(6200):1070-4. doi: 10.1126/science.1256508. Epub 2014 Aug 7.


P-loop conformation governed crizotinib resistance in G2032R-mutated ROS1 tyrosine kinase: clues from free energy landscape.

Sun H, Li Y, Tian S, Wang J, Hou T.

PLoS Comput Biol. 2014 Jul 17;10(7):e1003729. doi: 10.1371/journal.pcbi.1003729. eCollection 2014 Jul.


Ligand photo-isomerization triggers conformational changes in iGluR2 ligand binding domain.

Wolter T, Steinbrecher T, Trauner D, Elstner M.

PLoS One. 2014 Apr 8;9(4):e92716. doi: 10.1371/journal.pone.0092716. eCollection 2014.


Role of cross-cleft contacts in NMDA receptor gating.

Paganelli MA, Kussius CL, Popescu GK.

PLoS One. 2013 Nov 21;8(11):e80953. doi: 10.1371/journal.pone.0080953. eCollection 2013.


The molecular mechanism of ion-dependent gating in secondary transporters.

Zhao C, Noskov SY.

PLoS Comput Biol. 2013 Oct;9(10):e1003296. doi: 10.1371/journal.pcbi.1003296. Epub 2013 Oct 24.


Efficient determination of protein-protein standard binding free energies from first principles.

Gumbart JC, Roux B, Chipot C.

J Chem Theory Comput. 2013 Aug 13;9(8). doi: 10.1021/ct400273t.


Calculating the sensitivity and robustness of binding free energy calculations to force field parameters.

Rocklin GJ, Mobley DL, Dill KA.

J Chem Theory Comput. 2013 Jul 9;9(7):3072-3083.


Conformational analysis of NMDA receptor GluN1, GluN2, and GluN3 ligand-binding domains reveals subtype-specific characteristics.

Yao Y, Belcher J, Berger AJ, Mayer ML, Lau AY.

Structure. 2013 Oct 8;21(10):1788-99. doi: 10.1016/j.str.2013.07.011. Epub 2013 Aug 22.

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