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Items: 1 to 20 of 202


Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy.

Campanaro S, Treu L, Kougias PG, De Francisci D, Valle G, Angelidaki I.

Biotechnol Biofuels. 2016 Feb 2;9:26. doi: 10.1186/s13068-016-0441-1. eCollection 2016.


Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition.

Wang C, Dong D, Wang H, Müller K, Qin Y, Wang H, Wu W.

Biotechnol Biofuels. 2016 Jan 29;9:22. doi: 10.1186/s13068-016-0440-2. eCollection 2016.


Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.

Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA.

PLoS One. 2016 Jan 20;11(1):e0147229. doi: 10.1371/journal.pone.0147229. eCollection 2016.


Deep insights into carbohydrate metabolism in the rumen of Mehsani buffalo at different diet treatments.

Parmar NR, Nirmal Kumar JI, Joshi CG.

Genom Data. 2015 Aug 12;6:59-62. doi: 10.1016/j.gdata.2015.08.007. eCollection 2015 Dec.


Identification of low abundance microbiome in clinical samples using whole genome sequencing.

Zhang C, Cleveland K, Schnoll-Sussman F, McClure B, Bigg M, Thakkar P, Schultz N, Shah MA, Betel D.

Genome Biol. 2015 Nov 27;16:265. doi: 10.1186/s13059-015-0821-z.


Metagenomic analysis of the rumen microbial community following inhibition of methane formation by a halogenated methane analog.

Denman SE, Martinez Fernandez G, Shinkai T, Mitsumori M, McSweeney CS.

Front Microbiol. 2015 Oct 13;6:1087. doi: 10.3389/fmicb.2015.01087. eCollection 2015.


Anvi'o: an advanced analysis and visualization platform for 'omics data.

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO.

PeerJ. 2015 Oct 8;3:e1319. doi: 10.7717/peerj.1319. eCollection 2015.


Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units in wastewater treatment process.

Xia Y, Chin FY, Chao Y, Zhang T.

Biotechnol Biofuels. 2015 Oct 22;8:172. doi: 10.1186/s13068-015-0348-2. eCollection 2015.


The rumen microbial metagenome associated with high methane production in cattle.

Wallace RJ, Rooke JA, McKain N, Duthie CA, Hyslop JJ, Ross DW, Waterhouse A, Watson M, Roehe R.

BMC Genomics. 2015 Oct 23;16:839. doi: 10.1186/s12864-015-2032-0.


The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants.

Aylward FO, Currie CR, Suen G.

Insects. 2012 Jan 6;3(1):41-61. doi: 10.3390/insects3010041. Review.


Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities.

Tan B, Ng C, Nshimyimana JP, Loh LL, Gin KY, Thompson JR.

Front Microbiol. 2015 Sep 25;6:1027. doi: 10.3389/fmicb.2015.01027. eCollection 2015. Review.


Limited dissemination of the wastewater treatment plant core resistome.

Munck C, Albertsen M, Telke A, Ellabaan M, Nielsen PH, Sommer MO.

Nat Commun. 2015 Sep 30;6:8452. doi: 10.1038/ncomms9452.


Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.

Ferrer M, Martínez-Martínez M, Bargiela R, Streit WR, Golyshina OV, Golyshin PN.

Microb Biotechnol. 2015 Aug 14. doi: 10.1111/1751-7915.12309. [Epub ahead of print]


From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.

Garza DR, Dutilh BE.

Cell Mol Life Sci. 2015 Nov;72(22):4287-308. doi: 10.1007/s00018-015-2004-1. Epub 2015 Aug 9.


Illumina MiSeq Phylogenetic Amplicon Sequencing Shows a Large Reduction of an Uncharacterised Succinivibrionaceae and an Increase of the Methanobrevibacter gottschalkii Clade in Feed Restricted Cattle.

McCabe MS, Cormican P, Keogh K, O'Connor A, O'Hara E, Palladino RA, Kenny DA, Waters SM.

PLoS One. 2015 Jul 30;10(7):e0133234. doi: 10.1371/journal.pone.0133234. eCollection 2015.


High Genetic Diversity of Microbial Cellulase and Hemicellulase Genes in the Hindgut of Holotrichia parallela Larvae.

Sheng P, Li Y, Marshall SD, Zhang H.

Int J Mol Sci. 2015 Jul 21;16(7):16545-59. doi: 10.3390/ijms160716545.


Metagenomic surveys of gut microbiota.

Mandal RS, Saha S, Das S.

Genomics Proteomics Bioinformatics. 2015 Jun;13(3):148-58. doi: 10.1016/j.gpb.2015.02.005. Epub 2015 Jul 13. Review.


Biotechnological applications of functional metagenomics in the food and pharmaceutical industries.

Coughlan LM, Cotter PD, Hill C, Alvarez-Ordóñez A.

Front Microbiol. 2015 Jun 30;6:672. doi: 10.3389/fmicb.2015.00672. eCollection 2015. Review.


Structural Features of a Bacteroidetes-Affiliated Cellulase Linked with a Polysaccharide Utilization Locus.

Naas AE, MacKenzie AK, Dalhus B, Eijsink VG, Pope PB.

Sci Rep. 2015 Jul 2;5:11666. doi: 10.1038/srep11666.


Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology.

Ufarté L, Potocki-Veronese G, Laville É.

Front Microbiol. 2015 Jun 5;6:563. doi: 10.3389/fmicb.2015.00563. eCollection 2015. Review.

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