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Results: 1 to 20 of 34

1.

Fast and accurate discovery of degenerate linear motifs in protein sequences.

Kelil A, Dubreuil B, Levy ED, Michnick SW.

PLoS One. 2014 Sep 10;9(9):e106081. doi: 10.1371/journal.pone.0106081. eCollection 2014.

PMID:
25207816
[PubMed - in process]
Free PMC Article
2.

Alteration of protein levels during influenza virus H1N1 infection in host cells: a proteomic survey of host and virus reveals differential dynamics.

Kummer S, Flöttmann M, Schwanhäusser B, Sieben C, Veit M, Selbach M, Klipp E, Herrmann A.

PLoS One. 2014 Apr 9;9(4):e94257. doi: 10.1371/journal.pone.0094257. eCollection 2014.

PMID:
24718678
[PubMed - in process]
Free PMC Article
3.

Competitive and cooperative interactions mediate RNA transfer from herpesvirus saimiri ORF57 to the mammalian export adaptor ALYREF.

Tunnicliffe RB, Hautbergue GM, Wilson SA, Kalra P, Golovanov AP.

PLoS Pathog. 2014 Feb 13;10(2):e1003907. doi: 10.1371/journal.ppat.1003907. eCollection 2014 Feb.

PMID:
24550725
[PubMed - in process]
Free PMC Article
4.

Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes.

Ivarsson Y, Arnold R, McLaughlin M, Nim S, Joshi R, Ray D, Liu B, Teyra J, Pawson T, Moffat J, Li SS, Sidhu SS, Kim PM.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2542-7. doi: 10.1073/pnas.1312296111. Epub 2014 Feb 3.

PMID:
24550280
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A LC3-interacting motif in the influenza A virus M2 protein is required to subvert autophagy and maintain virion stability.

Beale R, Wise H, Stuart A, Ravenhill BJ, Digard P, Randow F.

Cell Host Microbe. 2014 Feb 12;15(2):239-47. doi: 10.1016/j.chom.2014.01.006.

PMID:
24528869
[PubMed - in process]
Free PMC Article
6.

Potential of known and short prokaryotic protein motifs as a basis for novel peptide-based antibacterial therapeutics: a computational survey.

Ruhanen H, Hurley D, Ghosh A, O'Brien KT, Johnston CR, Shields DC.

Front Microbiol. 2014 Jan 21;5:4. doi: 10.3389/fmicb.2014.00004. eCollection 2014.

PMID:
24478765
[PubMed]
Free PMC Article
7.

Signatures of pleiotropy, economy and convergent evolution in a domain-resolved map of human-virus protein-protein interaction networks.

Garamszegi S, Franzosa EA, Xia Y.

PLoS Pathog. 2013;9(12):e1003778. doi: 10.1371/journal.ppat.1003778. Epub 2013 Dec 5.

PMID:
24339775
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The eukaryotic linear motif resource ELM: 10 years and counting.

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7.

PMID:
24214962
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Conformational dissection of a viral intrinsically disordered domain involved in cellular transformation.

Noval MG, Gallo M, Perrone S, Salvay AG, Chemes LB, de Prat-Gay G.

PLoS One. 2013 Sep 27;8(9):e72760. doi: 10.1371/journal.pone.0072760. eCollection 2013.

PMID:
24086265
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Arginine rich short linear motif of HIV-1 regulatory proteins inhibits dicer dependent RNA interference.

Ponia SS, Arora S, Kumar B, Banerjea AC.

Retrovirology. 2013 Sep 11;10:97. doi: 10.1186/1742-4690-10-97.

PMID:
24025624
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Modulation of allostery by protein intrinsic disorder.

Ferreon AC, Ferreon JC, Wright PE, Deniz AA.

Nature. 2013 Jun 20;498(7454):390-4. doi: 10.1038/nature12294.

PMID:
23783631
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Marked variability in the extent of protein disorder within and between viral families.

Pushker R, Mooney C, Davey NE, Jacqué JM, Shields DC.

PLoS One. 2013 Apr 19;8(4):e60724. doi: 10.1371/journal.pone.0060724. Print 2013.

PMID:
23620725
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Stochastic machines as a colocalization mechanism for scaffold protein function.

Xue B, Romero PR, Noutsou M, Maurice MM, Rüdiger SG, William AM Jr, Mizianty MJ, Kurgan L, Uversky VN, Dunker AK.

FEBS Lett. 2013 Jun 5;587(11):1587-91. doi: 10.1016/j.febslet.2013.04.006. Epub 2013 Apr 18.

PMID:
23603389
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Structural basis for hijacking of cellular LxxLL motifs by papillomavirus E6 oncoproteins.

Zanier K, Charbonnier S, Sidi AO, McEwen AG, Ferrario MG, Poussin-Courmontagne P, Cura V, Brimer N, Babah KO, Ansari T, Muller I, Stote RH, Cavarelli J, Vande Pol S, Travé G.

Science. 2013 Feb 8;339(6120):694-8. doi: 10.1126/science.1229934.

PMID:
23393263
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A systems biology starter kit for arenaviruses.

Droniou-Bonzom ME, Cannon PM.

Viruses. 2012 Dec;4(12):3625-46. Review.

PMID:
23342371
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The HPV E2-Host Protein-Protein Interactions: A Complex Hijacking of the Cellular Network.

Muller M, Demeret C.

Open Virol J. 2012;6:173-89. doi: 10.2174/1874357901206010173. Epub 2012 Dec 28.

PMID:
23341853
[PubMed]
Free PMC Article
17.

Toward a three-dimensional view of protein networks between species.

Franzosa EA, Garamszegi S, Xia Y.

Front Microbiol. 2012 Dec 21;3:428. doi: 10.3389/fmicb.2012.00428. eCollection 2012.

PMID:
23267356
[PubMed]
Free PMC Article
18.

Sequence evolution of the intrinsically disordered and globular domains of a model viral oncoprotein.

Chemes LB, Glavina J, Alonso LG, Marino-Buslje C, de Prat-Gay G, Sánchez IE.

PLoS One. 2012;7(10):e47661. doi: 10.1371/journal.pone.0047661. Epub 2012 Oct 31.

PMID:
23118886
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions.

Davey NE, Cowan JL, Shields DC, Gibson TJ, Coldwell MJ, Edwards RJ.

Nucleic Acids Res. 2012 Nov;40(21):10628-41. doi: 10.1093/nar/gks854. Epub 2012 Sep 12.

PMID:
22977176
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

HTLV-1 Rex: the courier of viral messages making use of the host vehicle.

Nakano K, Watanabe T.

Front Microbiol. 2012 Sep 6;3:330. doi: 10.3389/fmicb.2012.00330. eCollection 2012.

PMID:
22973269
[PubMed]
Free PMC Article

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