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Results: 1 to 20 of 91

Cited In for PubMed (Select 21097780)

1.

SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.

Metri R, Hariharaputran S, Ramakrishnan G, Anand P, Raghavender US, Ochoa-Montaño B, Higueruelo AP, Sowdhamini R, Chandra NR, Blundell TL, Srinivasan N.

Database (Oxford). 2015 Jun 30;2015:bav060. doi: 10.1093/database/bav060. Print 2015.

2.

Humanized-VHH transbodies that inhibit HCV protease and replication.

Jittavisutthikul S, Thanongsaksrikul J, Thueng-In K, Chulanetra M, Srimanote P, Seesuay W, Malik AA, Chaicumpa W.

Viruses. 2015 Apr 20;7(4):2030-56. doi: 10.3390/v7042030.

3.

EGFR Mutant Structural Database: computationally predicted 3D structures and the corresponding binding free energies with gefitinib and erlotinib.

Ma L, Wang DD, Huang Y, Yan H, Wong MP, Lee VH.

BMC Bioinformatics. 2015 Mar 14;16:85. doi: 10.1186/s12859-015-0522-3.

4.

Biochemical functional predictions for protein structures of unknown or uncertain function.

Mills CL, Beuning PJ, Ondrechen MJ.

Comput Struct Biotechnol J. 2015 Feb 18;13:182-91. doi: 10.1016/j.csbj.2015.02.003. eCollection 2015. Review.

5.

CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis.

Ochoa-Montaño B, Mohan N, Blundell TL.

Database (Oxford). 2015 Mar 31;2015. pii: bav026. doi: 10.1093/database/bav026. Print 2015.

6.

Ligand-target prediction by structural network biology using nAnnoLyze.

Martínez-Jiménez F, Marti-Renom MA.

PLoS Comput Biol. 2015 Mar 27;11(3):e1004157. doi: 10.1371/journal.pcbi.1004157. eCollection 2015 Mar.

7.

Arc is a flexible modular protein capable of reversible self-oligomerization.

Myrum C, Baumann A, Bustad HJ, Flydal MI, Mariaule V, Alvira S, Cuéllar J, Haavik J, Soulé J, Valpuesta JM, Márquez JA, Martinez A, Bramham CR.

Biochem J. 2015 May 15;468(1):145-58. doi: 10.1042/BJ20141446.

8.

MmTX1 and MmTX2 from coral snake venom potently modulate GABAA receptor activity.

Rosso JP, Schwarz JR, Diaz-Bustamante M, Céard B, Gutiérrez JM, Kneussel M, Pongs O, Bosmans F, Bougis PE.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E891-900. doi: 10.1073/pnas.1415488112. Epub 2015 Feb 9.

9.

Genome-wide Analysis of Mycoplasma hominis for the Identification of Putative Therapeutic Targets.

Parvege MM, Rahman M, Hossain MS.

Drug Target Insights. 2014 Dec 9;8:51-62. doi: 10.4137/DTI.S19728. eCollection 2014.

10.

Structure based annotation of Helicobacter pylori strain 26695 proteome.

Singh S, Guttula PK, Guruprasad L.

PLoS One. 2014 Dec 30;9(12):e115020. doi: 10.1371/journal.pone.0115020. eCollection 2014.

11.

Homology modeling, molecular dynamics, and site-directed mutagenesis study of AlkB human homolog 1 (ALKBH1).

Silvestrov P, Müller TA, Clark KN, Hausinger RP, Cisneros GA.

J Mol Graph Model. 2014 Nov;54:123-30. doi: 10.1016/j.jmgm.2014.10.013. Epub 2014 Oct 27.

PMID:
25459764
12.

Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactions.

Betts MJ, Lu Q, Jiang Y, Drusko A, Wichmann O, Utz M, Valtierra-Gutiérrez IA, Schlesner M, Jaeger N, Jones DT, Pfister S, Lichter P, Eils R, Siebert R, Bork P, Apic G, Gavin AC, Russell RB.

Nucleic Acids Res. 2015 Jan;43(2):e10. doi: 10.1093/nar/gku1094. Epub 2014 Nov 11.

13.

Molecular Docking of Known Carcinogen 4- (Methyl-nitrosamino)-1-(3-pyridyl)-1-butanone (NNK) with Cyclin Dependent Kinases towards Its Potential Role in Cell Cycle Perturbation.

Haneef M, Lohani M, Dhasmana A, Jamal QM, Shahid SM, Firdaus S.

Bioinformation. 2014 Aug 30;10(8):526-32. doi: 10.6026/97320630010526. eCollection 2014.

14.

Structural bioinformatics of the interactome.

Petrey D, Honig B.

Annu Rev Biophys. 2014;43:193-210. doi: 10.1146/annurev-biophys-051013-022726. Review.

15.

Adenine nucleotide translocase is acetylated in vivo in human muscle: Modeling predicts a decreased ADP affinity and altered control of oxidative phosphorylation.

Mielke C, Lefort N, McLean CG, Cordova JM, Langlais PR, Bordner AJ, Te JA, Ozkan SB, Willis WT, Mandarino LJ.

Biochemistry. 2014 Jun 17;53(23):3817-29. doi: 10.1021/bi401651e. Epub 2014 Jun 9.

16.

A conserved loop in the catalytic domain of eukaryotic elongation factor 2 kinase plays a key role in its substrate specificity.

Moore CE, Regufe da Mota S, Mikolajek H, Proud CG.

Mol Cell Biol. 2014 Jun;34(12):2294-307. doi: 10.1128/MCB.00388-14. Epub 2014 Apr 14.

17.

Nuclear trafficking of the HIV-1 pre-integration complex depends on the ADAM10 intracellular domain.

Endsley MA, Somasunderam AD, Li G, Oezguen N, Thiviyanathan V, Murray JL, Rubin DH, Hodge TW, O'Brien WA, Lewis B, Ferguson MR.

Virology. 2014 Apr;454-455:60-6. doi: 10.1016/j.virol.2014.02.006. Epub 2014 Feb 22.

18.

Estimation of protein function using template-based alignment of enzyme active sites.

Hanson B, Westin C, Rosa M, Grier A, Osipovitch M, MacDonald ML, Dodge G, Boli PM, Corwin CW, Kessler H, McKay T, Bernstein HJ, Craig PA.

BMC Bioinformatics. 2014 Mar 27;15:87. doi: 10.1186/1471-2105-15-87.

19.

FreeContact: fast and free software for protein contact prediction from residue co-evolution.

Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B.

BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85.

20.
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