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Items: 14

1.

Pushing the size limit of de novo structure ensemble prediction guided by sparse SDSL-EPR restraints to 200 residues: The monomeric and homodimeric forms of BAX.

Fischer AW, Bordignon E, Bleicken S, García-Sáez AJ, Jeschke G, Meiler J.

J Struct Biol. 2016 Jul;195(1):62-71. doi: 10.1016/j.jsb.2016.04.014. Epub 2016 Apr 27.

PMID:
27129417
2.

Structure of an E. coli integral membrane sulfurtransferase and its structural transition upon SCN(-) binding defined by EPR-based hybrid method.

Ling S, Wang W, Yu L, Peng J, Cai X, Xiong Y, Hayati Z, Zhang L, Zhang Z, Song L, Tian C.

Sci Rep. 2016 Jan 28;6:20025. doi: 10.1038/srep20025.

3.

Assembly states of FliM and FliG within the flagellar switch complex.

Sircar R, Borbat PP, Lynch MJ, Bhatnagar J, Beyersdorf MS, Halkides CJ, Freed JH, Crane BR.

J Mol Biol. 2015 Feb 27;427(4):867-86. doi: 10.1016/j.jmb.2014.12.009. Epub 2014 Dec 20.

4.

Computational modeling of membrane proteins.

Koehler Leman J, Ulmschneider MB, Gray JJ.

Proteins. 2015 Jan;83(1):1-24. doi: 10.1002/prot.24703. Epub 2014 Nov 19. Review.

5.

Tau binds to lipid membrane surfaces via short amphipathic helices located in its microtubule-binding repeats.

Georgieva ER, Xiao S, Borbat PP, Freed JH, Eliezer D.

Biophys J. 2014 Sep 16;107(6):1441-52. doi: 10.1016/j.bpj.2014.07.046.

6.

RosettaEPR: rotamer library for spin label structure and dynamics.

Alexander NS, Stein RA, Koteiche HA, Kaufmann KW, McHaourab HS, Meiler J.

PLoS One. 2013 Sep 5;8(9):e72851. doi: 10.1371/journal.pone.0072851. eCollection 2013.

7.

Restrained-ensemble molecular dynamics simulations based on distance histograms from double electron-electron resonance spectroscopy.

Roux B, Islam SM.

J Phys Chem B. 2013 May 2;117(17):4733-9. doi: 10.1021/jp3110369. Epub 2013 Apr 11.

8.

Structural refinement from restrained-ensemble simulations based on EPR/DEER data: application to T4 lysozyme.

Islam SM, Stein RA, McHaourab HS, Roux B.

J Phys Chem B. 2013 May 2;117(17):4740-54. doi: 10.1021/jp311723a. Epub 2013 Apr 11.

9.

Conformational ensemble of the sodium-coupled aspartate transporter.

Georgieva ER, Borbat PP, Ginter C, Freed JH, Boudker O.

Nat Struct Mol Biol. 2013 Feb;20(2):215-21. doi: 10.1038/nsmb.2494. Epub 2013 Jan 20.

10.

BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements.

Karakaş M, Woetzel N, Staritzbichler R, Alexander N, Weiner BE, Meiler J.

PLoS One. 2012;7(11):e49240. doi: 10.1371/journal.pone.0049240. Epub 2012 Nov 16.

11.

MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL.

Hagelueken G, Ward R, Naismith JH, Schiemann O.

Appl Magn Reson. 2012 Apr;42(3):377-391. Epub 2012 Feb 3.

12.

Global structure of a three-way junction in a phi29 packaging RNA dimer determined using site-directed spin labeling.

Zhang X, Tung CS, Sowa GZ, Hatmal MM, Haworth IS, Qin PZ.

J Am Chem Soc. 2012 Feb 8;134(5):2644-52. doi: 10.1021/ja2093647. Epub 2012 Jan 27.

13.

Toward the fourth dimension of membrane protein structure: insight into dynamics from spin-labeling EPR spectroscopy.

McHaourab HS, Steed PR, Kazmier K.

Structure. 2011 Nov 9;19(11):1549-61. doi: 10.1016/j.str.2011.10.009. Review.

14.

Membrane protein structure determination using paramagnetic tags.

Ganguly S, Weiner BE, Meiler J.

Structure. 2011 Apr 13;19(4):441-3. doi: 10.1016/j.str.2011.03.008.

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