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Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle.

Sasaki S, Watanabe T, Nishimura S, Sugimoto Y.

BMC Genet. 2016 Jan 25;17:26. doi: 10.1186/s12863-016-0335-z.


MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R.

Genome Biol. 2015 Dec 10;16:278. doi: 10.1186/s13059-015-0844-5.


An Orthologous Epigenetic Gene Expression Signature Derived from Differentiating Embryonic Stem Cells Identifies Regulators of Cardiogenesis.

Busser BW, Lin Y, Yang Y, Zhu J, Chen G, Michelson AM.

PLoS One. 2015 Oct 20;10(10):e0141066. doi: 10.1371/journal.pone.0141066. eCollection 2015.


Prioritizing Clinically Relevant Copy Number Variation from Genetic Interactions and Gene Function Data.

Foong J, Girdea M, Stavropoulos J, Brudno M.

PLoS One. 2015 Oct 5;10(10):e0139656. doi: 10.1371/journal.pone.0139656. eCollection 2015.


Antigen-Specific Th17 Cells Are Primed by Distinct and Complementary Dendritic Cell Subsets in Oropharyngeal Candidiasis.

Trautwein-Weidner K, Gladiator A, Kirchner FR, Becattini S, Rülicke T, Sallusto F, LeibundGut-Landmann S.

PLoS Pathog. 2015 Oct 2;11(10):e1005164. doi: 10.1371/journal.ppat.1005164. eCollection 2015 Oct.


Mouse Genome Informatics (MGI): reflecting on 25 years.

Eppig JT, Richardson JE, Kadin JA, Ringwald M, Blake JA, Bult CJ.

Mamm Genome. 2015 Aug;26(7-8):272-84. doi: 10.1007/s00335-015-9589-4. Epub 2015 Aug 4. Review.


Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea.

Grazziotin AL, Vidal NM, Venancio TM.

FEBS J. 2015 Sep;282(17):3395-411. doi: 10.1111/febs.13350. Epub 2015 Jul 14.


Sex differences in brain plasticity: a new hypothesis for sex ratio bias in autism.

Mottron L, Duret P, Mueller S, Moore RD, Forgeot d'Arc B, Jacquemont S, Xiong L.

Mol Autism. 2015 Jun 5;6:33. doi: 10.1186/s13229-015-0024-1. eCollection 2015.


Evaluating historical candidate genes for schizophrenia.

Farrell MS, Werge T, Sklar P, Owen MJ, Ophoff RA, O'Donovan MC, Corvin A, Cichon S, Sullivan PF.

Mol Psychiatry. 2015 May;20(5):555-62. doi: 10.1038/mp.2015.16. Epub 2015 Mar 10. Review.


Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.

Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang G.

Gigascience. 2014 Dec 12;3(1):27. doi: 10.1186/2047-217X-3-27. eCollection 2014.


Discovery Genetics - The History and Future of Spontaneous Mutation Research.

Davisson MT, Bergstrom DE, Reinholdt LG, Donahue LR.

Curr Protoc Mouse Biol. 2012 Jun 1;2:103-118.


The contribution of de novo coding mutations to autism spectrum disorder.

Iossifov I, O'Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D, Stessman HA, Witherspoon KT, Vives L, Patterson KE, Smith JD, Paeper B, Nickerson DA, Dea J, Dong S, Gonzalez LE, Mandell JD, Mane SM, Murtha MT, Sullivan CA, Walker MF, Waqar Z, Wei L, Willsey AJ, Yamrom B, Lee YH, Grabowska E, Dalkic E, Wang Z, Marks S, Andrews P, Leotta A, Kendall J, Hakker I, Rosenbaum J, Ma B, Rodgers L, Troge J, Narzisi G, Yoon S, Schatz MC, Ye K, McCombie WR, Shendure J, Eichler EE, State MW, Wigler M.

Nature. 2014 Nov 13;515(7526):216-21. doi: 10.1038/nature13908. Epub 2014 Oct 29.


A simple repeat polymorphism in the MITF-M promoter is a key regulator of white spotting in dogs.

Baranowska Körberg I, Sundström E, Meadows JR, Rosengren Pielberg G, Gustafson U, Hedhammar Å, Karlsson EK, Seddon J, Söderberg A, Vilà C, Zhang X, Åkesson M, Lindblad-Toh K, Andersson G, Andersson L.

PLoS One. 2014 Aug 12;9(8):e104363. doi: 10.1371/journal.pone.0104363. eCollection 2014.


Comments on "Human dominant disease genes are enriched in paralogs originating from whole genome duplication".

Chen WH, Zhao XM, van Noort V, Bork P.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003758. doi: 10.1371/journal.pcbi.1003758. eCollection 2014 Jul. No abstract available.


GWAS in a box: statistical and visual analytics of structured associations via GenAMap.

Xing EP, Curtis RE, Schoenherr G, Lee S, Yin J, Puniyani K, Wu W, Kinnaird P.

PLoS One. 2014 Jun 6;9(6):e97524. doi: 10.1371/journal.pone.0097524. eCollection 2014.


Copy number variation in schizophrenia in Sweden.

Szatkiewicz JP, O'Dushlaine C, Chen G, Chambert K, Moran JL, Neale BM, Fromer M, Ruderfer D, Akterin S, Bergen SE, Kähler A, Magnusson PK, Kim Y, Crowley JJ, Rees E, Kirov G, O'Donovan MC, Owen MJ, Walters J, Scolnick E, Sklar P, Purcell S, Hultman CM, McCarroll SA, Sullivan PF.

Mol Psychiatry. 2014 Jul;19(7):762-73. doi: 10.1038/mp.2014.40. Epub 2014 Apr 29.


Linking tissues to phenotypes using gene expression profiles.

Oellrich A; Sanger Mouse Genetics Project, Smedley D.

Database (Oxford). 2014 Mar 13;2014:bau017. doi: 10.1093/database/bau017. Print 2014.


Conditional knockout of CTGF affects corneal wound healing.

Gibson DJ, Pi L, Sriram S, Mao C, Petersen BE, Scott EW, Leask A, Schultz GS.

Invest Ophthalmol Vis Sci. 2014 Apr 1;55(4):2062-70. doi: 10.1167/iovs.13-12735.


A scoring strategy combining statistics and functional genomics supports a possible role for common polygenic variation in autism.

Carayol J, Schellenberg GD, Dombroski B, Amiet C, Génin B, Fontaine K, Rousseau F, Vazart C, Cohen D, Frazier TW, Hardan AY, Dawson G, Rio Frio T.

Front Genet. 2014 Feb 18;5:33. doi: 10.3389/fgene.2014.00033. eCollection 2014.


Disruption of G-protein γ5 subtype causes embryonic lethality in mice.

Moon AM, Stauffer AM, Schwindinger WF, Sheridan K, Firment A, Robishaw JD.

PLoS One. 2014 Mar 5;9(3):e90970. doi: 10.1371/journal.pone.0090970. eCollection 2014.

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