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Results: 1 to 20 of 29

1.

Molecular Analysis of β-Lactamase Genes to Understand their Differential Expression in Strains of Yersinia enterocolitica Biotype 1A.

Singhal N, Kumar M, Virdi JS.

Sci Rep. 2014 Jun 12;4:5270. doi: 10.1038/srep05270.

PMID:
24920253
[PubMed - in process]
Free PMC Article
2.

Towards structural systems pharmacology to study complex diseases and personalized medicine.

Xie L, Ge X, Tan H, Xie L, Zhang Y, Hart T, Yang X, Bourne PE.

PLoS Comput Biol. 2014 May 15;10(5):e1003554. doi: 10.1371/journal.pcbi.1003554. eCollection 2014 May.

PMID:
24830652
[PubMed - in process]
Free PMC Article
3.

TCMSP: a database of systems pharmacology for drug discovery from herbal medicines.

Ru J, Li P, Wang J, Zhou W, Li B, Huang C, Li P, Guo Z, Tao W, Yang Y, Xu X, Li Y, Wang Y, Yang L.

J Cheminform. 2014 Apr 16;6:13. doi: 10.1186/1758-2946-6-13. eCollection 2014.

4.

CheNER: chemical named entity recognizer.

Usié A, Alves R, Solsona F, Vázquez M, Valencia A.

Bioinformatics. 2014 Apr 1;30(7):1039-40. doi: 10.1093/bioinformatics/btt639. Epub 2013 Nov 13.

PMID:
24227678
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Incorporating new technologies into toxicity testing and risk assessment: moving from 21st century vision to a data-driven framework.

Thomas RS, Philbert MA, Auerbach SS, Wetmore BA, Devito MJ, Cote I, Rowlands JC, Whelan MP, Hays SM, Andersen ME, Meek ME, Reiter LW, Lambert JC, Clewell HJ 3rd, Stephens ML, Zhao QJ, Wesselkamper SC, Flowers L, Carney EW, Pastoor TP, Petersen DD, Yauk CL, Nong A.

Toxicol Sci. 2013 Nov;136(1):4-18. doi: 10.1093/toxsci/kft178. Epub 2013 Aug 19.

PMID:
23958734
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key.

Haupt VJ, Daminelli S, Schroeder M.

PLoS One. 2013 Jun 21;8(6):e65894. Print 2013.

PMID:
23805191
[PubMed - as supplied by publisher]
Free PMC Article
7.

Enhancement of chemical entity identification in text using semantic similarity validation.

Grego T, Couto FM.

PLoS One. 2013 May 2;8(5):e62984. doi: 10.1371/journal.pone.0062984. Print 2013.

PMID:
23658791
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

New Perspectives on How to Discover Drugs from Herbal Medicines: CAM's Outstanding Contribution to Modern Therapeutics.

Pan SY, Zhou SF, Gao SH, Yu ZL, Zhang SF, Tang MK, Sun JN, Ma DL, Han YF, Fong WF, Ko KM.

Evid Based Complement Alternat Med. 2013;2013:627375. doi: 10.1155/2013/627375. Epub 2013 Mar 24.

PMID:
23634172
[PubMed]
Free PMC Article
9.

Extracting and connecting chemical structures from text sources using chemicalize.org.

Southan C, Stracz A.

J Cheminform. 2013 Apr 23;5(1):20. doi: 10.1186/1758-2946-5-20.

PMID:
23618056
[PubMed]
Free PMC Article
10.

Traditional chinese medicine-based network pharmacology could lead to new multicompound drug discovery.

Li J, Lu C, Jiang M, Niu X, Guo H, Li L, Bian Z, Lin N, Lu A.

Evid Based Complement Alternat Med. 2012;2012:149762. doi: 10.1155/2012/149762. Epub 2012 Dec 17.

PMID:
23346189
[PubMed]
Free PMC Article
11.

SARConnect: A Tool to Interrogate the Connectivity Between Proteins, Chemical Structures and Activity Data.

Eriksson M, Nilsson I, Kogej T, Southan C, Johansson M, Tyrchan C, Muresan S, Blomberg N, Bjäreland M.

Mol Inform. 2012 Aug;31(8):555-568. Epub 2012 Aug 7.

PMID:
23308082
[PubMed]
Free PMC Article
12.

Large-scale reverse docking profiles and their applications.

Lee M, Kim D.

BMC Bioinformatics. 2012;13 Suppl 17:S6. doi: 10.1186/1471-2105-13-S17-S6. Epub 2012 Dec 13.

PMID:
23282219
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Kinome-wide activity modeling from diverse public high-quality data sets.

Schürer SC, Muskal SM.

J Chem Inf Model. 2013 Jan 28;53(1):27-38. doi: 10.1021/ci300403k. Epub 2013 Jan 9.

PMID:
23259810
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CYPSI: a structure-based interface for cytochrome P450s and ligands in Arabidopsis thaliana.

Zhang G, Zhang Y, Su Z.

BMC Bioinformatics. 2012 Dec 20;13:332. doi: 10.1186/1471-2105-13-332.

PMID:
23256889
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

HMDB 3.0--The Human Metabolome Database in 2013.

Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, Liu Y, Djoumbou Y, Mandal R, Aziat F, Dong E, Bouatra S, Sinelnikov I, Arndt D, Xia J, Liu P, Yallou F, Bjorndahl T, Perez-Pineiro R, Eisner R, Allen F, Neveu V, Greiner R, Scalbert A.

Nucleic Acids Res. 2013 Jan;41(Database issue):D801-7. doi: 10.1093/nar/gks1065. Epub 2012 Nov 17.

PMID:
23161693
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Formalization, annotation and analysis of diverse drug and probe screening assay datasets using the BioAssay Ontology (BAO).

Vempati UD, Przydzial MJ, Chung C, Abeyruwan S, Mir A, Sakurai K, Visser U, Lemmon VP, Schürer SC.

PLoS One. 2012;7(11):e49198. doi: 10.1371/journal.pone.0049198. Epub 2012 Nov 14.

PMID:
23155465
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Integrating constitutive gene expression and chemoactivity: mining the NCI60 anticancer screen.

Covell DG.

PLoS One. 2012;7(10):e44631. doi: 10.1371/journal.pone.0044631. Epub 2012 Oct 2.

PMID:
23056181
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Relating drug-protein interaction network with drug side effects.

Mizutani S, Pauwels E, Stoven V, Goto S, Yamanishi Y.

Bioinformatics. 2012 Sep 15;28(18):i522-i528. doi: 10.1093/bioinformatics/bts383.

PMID:
22962476
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Discovery of Small Molecule Kappa Opioid Receptor Agonist and Antagonist Chemotypes through a HTS and Hit Refinement Strategy.

Frankowski KJ, Hedrick MP, Gosalia P, Li K, Shi S, Whipple D, Ghosh P, Prisinzano TE, Schoenen FJ, Su Y, Vasile S, Sergienko E, Gray W, Hariharan S, Milan L, Heynen-Genel S, Mangravita-Novo A, Vicchiarelli M, Smith LH, Streicher JM, Caron MG, Barak LS, Bohn LM, Chung TD, Aubé J.

ACS Chem Neurosci. 2012 Mar 21;3(3):221-236. Epub 2012 Jan 20.

PMID:
22737280
[PubMed]
Free PMC Article
20.

Public domain databases for medicinal chemistry.

Nicola G, Liu T, Gilson MK.

J Med Chem. 2012 Aug 23;55(16):6987-7002. doi: 10.1021/jm300501t. Epub 2012 Jul 11. No abstract available.

PMID:
22731701
[PubMed - indexed for MEDLINE]
Free PMC Article

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