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Items: 9


An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum.

Siwo GH, Smith RS, Tan A, Button-Simons KA, Checkley LA, Ferdig MT.

BMC Genomics. 2015 Dec 4;16:1030. doi: 10.1186/s12864-015-2165-1.


Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis.

Khan SA, Virtanen S, Kallioniemi OP, Wennerberg K, Poso A, Kaski S.

Bioinformatics. 2014 Sep 1;30(17):i497-504. doi: 10.1093/bioinformatics/btu456.


Pathway analysis for drug repositioning based on public database mining.

Pan Y, Cheng T, Wang Y, Bryant SH.

J Chem Inf Model. 2014 Feb 24;54(2):407-18. doi: 10.1021/ci4005354. Epub 2014 Feb 5.


Web search and data mining of natural products and their bioactivities in PubChem.

Ming H, Tiejun C, Yanli W, Stephen BH.

Sci China Chem. 2013 Oct;56(10). doi: 10.1007/s11426-013-4910-0.


Somatic mutation patterns and compound response in cancers.

He N, Kim N, Yoon S.

BMB Rep. 2013 Feb;46(2):97-102.


Integrating constitutive gene expression and chemoactivity: mining the NCI60 anticancer screen.

Covell DG.

PLoS One. 2012;7(10):e44631. doi: 10.1371/journal.pone.0044631. Epub 2012 Oct 2.


Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs.

Khan SA, Faisal A, Mpindi JP, Parkkinen JA, Kalliokoski T, Poso A, Kallioniemi OP, Wennerberg K, Kaski S.

BMC Bioinformatics. 2012 May 30;13:112. doi: 10.1186/1471-2105-13-112.


Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis.

Xu T, Zhu R, Liu Q, Cao Z.

BMC Bioinformatics. 2012 May 4;13:75. doi: 10.1186/1471-2105-13-75.


Identifying compound-target associations by combining bioactivity profile similarity search and public databases mining.

Cheng T, Li Q, Wang Y, Bryant SH.

J Chem Inf Model. 2011 Sep 26;51(9):2440-8. doi: 10.1021/ci200192v. Epub 2011 Aug 18.

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