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Results: 1 to 20 of 79

1.

Integrative Pathway Analysis Using Graph-Based Learning with Applications to TCGA Colon and Ovarian Data.

Dellinger AE, Nixon AB, Pang H.

Cancer Inform. 2014 Jul 28;13(Suppl 4):1-9. doi: 10.4137/CIN.S13634. eCollection 2014.

PMID:
25125969
[PubMed]
Free PMC Article
2.

Integrating biological pathways and genomic profiles with ChiBE 2.

Babur O, Dogrusoz U, Cakır M, Aksoy BA, Schultz N, Sander C, Demir E.

BMC Genomics. 2014 Aug 3;15:642. doi: 10.1186/1471-2164-15-642.

PMID:
25086704
[PubMed - in process]
Free PMC Article
3.

Computational prognostic indicators for breast cancer.

Yang X, Ai X, Cunningham JM.

Cancer Manag Res. 2014 Jul 12;6:301-12. doi: 10.2147/CMAR.S46483. eCollection 2014. Review.

PMID:
25050076
[PubMed]
Free PMC Article
4.

Functional characterization of breast cancer using pathway profiles.

Tian F, Wang Y, Seiler M, Hu Z.

BMC Med Genomics. 2014 Jul 21;7(1):45. doi: 10.1186/1755-8794-7-45.

PMID:
25041817
[PubMed - in process]
Free PMC Article
5.

Identification of collaborative driver pathways in breast cancer.

Liu Y, Hu Z.

BMC Genomics. 2014 Jul 17;15:605. doi: 10.1186/1471-2164-15-605.

PMID:
25034939
[PubMed - in process]
Free PMC Article
6.

The common ground of genomics and systems biology.

Conesa A, Mortazavi A.

BMC Syst Biol. 2014 Mar 13;8 Suppl 2:S1. doi: 10.1186/1752-0509-8-S2-S1. Epub 2014 Mar 13.

PMID:
25033072
[PubMed - in process]
Free PMC Article
7.

Visualizing molecular profiles of glioblastoma with GBM-BioDP.

Celiku O, Johnson S, Zhao S, Camphausen K, Shankavaram U.

PLoS One. 2014 Jul 10;9(7):e101239. doi: 10.1371/journal.pone.0101239. eCollection 2014.

PMID:
25010047
[PubMed - in process]
Free PMC Article
8.

eXamine: exploring annotated modules in networks.

Dinkla K, El-Kebir M, Bucur CI, Siderius M, Smit MJ, Westenberg MA, Klau GW.

BMC Bioinformatics. 2014 Jul 10;15:201. doi: 10.1186/1471-2105-15-201.

PMID:
25002203
[PubMed - in process]
Free PMC Article
9.

Integrative analysis of longitudinal metabolomics data from a personal multi-omics profile.

Stanberry L, Mias GI, Haynes W, Higdon R, Snyder M, Kolker E.

Metabolites. 2013 Sep 3;3(3):741-60. doi: 10.3390/metabo3030741.

PMID:
24958148
[PubMed]
Free PMC Article
10.

Modeling the altered expression levels of genes on signaling pathways in tumors as causal bayesian networks.

Neapolitan R, Xue D, Jiang X.

Cancer Inform. 2014 May 25;13:77-84. doi: 10.4137/CIN.S13578. eCollection 2014.

PMID:
24932098
[PubMed]
Free PMC Article
11.

Robust clinical outcome prediction based on Bayesian analysis of transcriptional profiles and prior causal networks.

Zarringhalam K, Enayetallah A, Reddy P, Ziemek D.

Bioinformatics. 2014 Jun 15;30(12):i69-77. doi: 10.1093/bioinformatics/btu272.

PMID:
24932007
[PubMed - in process]
Free PMC Article
12.

Detecting independent and recurrent copy number aberrations using interval graphs.

Wu HT, Hajirasouliha I, Raphael BJ.

Bioinformatics. 2014 Jun 15;30(12):i195-203. doi: 10.1093/bioinformatics/btu276.

PMID:
24931984
[PubMed - in process]
Free PMC Article
13.

Pathway-driven discovery of rare mutational impact on cancer.

Ahn T, Park T.

Biomed Res Int. 2014;2014:171892. doi: 10.1155/2014/171892. Epub 2014 May 4.

PMID:
24883302
[PubMed - in process]
Free PMC Article
14.

Biomarker gene signature discovery integrating network knowledge.

Cun Y, Fröhlich H.

Biology (Basel). 2012 Feb 27;1(1):5-17. doi: 10.3390/biology1010005.

PMID:
24832044
[PubMed]
Free PMC Article
15.

Identifying pathogenic processes by integrating microarray data with prior knowledge.

Nygård S, Reitan T, Clancy T, Nygaard V, Bjørnstad J, Skrbic B, Tønnessen T, Christensen G, Hovig E.

BMC Bioinformatics. 2014 Apr 24;15:115. doi: 10.1186/1471-2105-15-115.

PMID:
24758699
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Interactive Visualization for Patient-to-Patient Comparison.

Nguyen QV, Nelmes G, Huang ML, Simoff S, Catchpoole D.

Genomics Inform. 2014 Mar;12(1):21-34. doi: 10.5808/GI.2014.12.1.21. Epub 2014 Mar 31.

PMID:
24748858
[PubMed]
Free PMC Article
17.

SPARSE INTEGRATIVE CLUSTERING OF MULTIPLE OMICS DATA SETS.

Shen R, Wang S, Mo Q.

Ann Appl Stat. 2013 Apr 9;7(1):269-294.

PMID:
24587839
[PubMed]
Free PMC Article
18.

Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine.

Raphael BJ, Dobson JR, Oesper L, Vandin F.

Genome Med. 2014 Jan 30;6(1):5. doi: 10.1186/gm524. eCollection 2014. Review.

PMID:
24479672
[PubMed]
Free PMC Article
19.

Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine.

Bottomly D, Ryabinin PA, Tyner JW, Chang BH, Loriaux MM, Druker BJ, McWeeney SK, Wilmot B.

Genome Med. 2013 Nov 29;5(11):103. doi: 10.1186/gm509. eCollection 2013.

PMID:
24286512
[PubMed]
Free PMC Article
20.

Characterization of aberrant pathways across human cancers.

Ylipää A, Yli-Harja O, Zhang W, Nykter M.

BMC Syst Biol. 2013;7 Suppl 1:S1. doi: 10.1186/1752-0509-7-S1-S1. Epub 2013 Aug 12.

PMID:
24267866
[PubMed - indexed for MEDLINE]
Free PMC Article

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