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Items: 10

1.

Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.

Jayavelu ND, Bar N.

BMC Genomics. 2015 Dec 18;16(1):1077. doi: 10.1186/s12864-015-2260-3.

2.

Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data.

Zhang J, Le TD, Liu L, Liu B, He J, Goodall GJ, Li J.

Bioinformatics. 2014 Nov 1;30(21):3070-7. doi: 10.1093/bioinformatics/btu489. Epub 2014 Jul 23.

3.

Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer.

Zhang W, Zang J, Jing X, Sun Z, Yan W, Yang D, Shen B, Guo F.

J Transl Med. 2014 Mar 11;12:66. doi: 10.1186/1479-5876-12-66.

4.

Ensemble classifier based on context specific miRNA regulation modules: a new method for cancer outcome prediction.

Zhou X, Liu J, Ye X, Wang W, Xiong J.

BMC Bioinformatics. 2013;14 Suppl 12:S6. doi: 10.1186/1471-2105-14-S12-S6. Epub 2013 Sep 24.

5.

Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis.

Baty F, Rüdiger J, Miglino N, Kern L, Borger P, Brutsche M.

BMC Bioinformatics. 2013 Jun 6;14:178. doi: 10.1186/1471-2105-14-178.

6.

miRNA target enrichment analysis reveals directly active miRNAs in health and disease.

Steinfeld I, Navon R, Ach R, Yakhini Z.

Nucleic Acids Res. 2013 Feb 1;41(3):e45. doi: 10.1093/nar/gks1142. Epub 2012 Dec 2.

7.

Integrated miRNA, mRNA and protein expression analysis reveals the role of post-transcriptional regulation in controlling CHO cell growth rate.

Clarke C, Henry M, Doolan P, Kelly S, Aherne S, Sanchez N, Kelly P, Kinsella P, Breen L, Madden SF, Zhang L, Leonard M, Clynes M, Meleady P, Barron N.

BMC Genomics. 2012 Nov 21;13:656. doi: 10.1186/1471-2164-13-656.

8.

microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.).

Macovei A, Tuteja N.

BMC Plant Biol. 2012 Oct 8;12:183. doi: 10.1186/1471-2229-12-183.

9.

Gene expression changes as markers of early lapatinib response in a panel of breast cancer cell lines.

O'Neill F, Madden SF, Aherne ST, Clynes M, Crown J, Doolan P, O'Connor R.

Mol Cancer. 2012 Jun 18;11:41. doi: 10.1186/1476-4598-11-41.

10.

mESAdb: microRNA expression and sequence analysis database.

Kaya KD, Karakülah G, Yakicier CM, Acar AC, Konu O.

Nucleic Acids Res. 2011 Jan;39(Database issue):D170-80. doi: 10.1093/nar/gkq1256.

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